MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.2 nTPM
HPA:74.2 nTPM
GTEx:75.5 nTPM
FANTOM5:118.3 Scaled Tags Per Million
Pig:87.4 nTPM
Mouse:136.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.8
2411 Female, age 72, unknown 75.0
1827 Male, age 72, unknown 74.4
1870 Female, age 42, unknown 72.2
2019 Male, age 18, unknown 70.1
2828 Female, age 72, unknown 69.3
1833 Male, age 53, unknown 66.7
2219 Male, age 76, both hemispheres 64.7
1830 Male, age 51, unknown 64.3
2666 Male, age 74, left hemisphere 60.9
2586 Male, age 75, left hemisphere 60.5
Dorsal raphe nucleus
nTPM: 71.3
2298 Female, age 72, unknown 84.9
2750 Male, age 76, both hemispheres 70.4
2047 Male, age 72, unknown 68.7
1828 Male, age 53, unknown 67.1
2016 Female, age 72, unknown 65.5
Inferior colliculus
nTPM: 69.0
2097 Female, age 72, unknown 76.9
1848 Female, age 42, unknown 68.9
1890 Male, age 53, unknown 67.0
2849 Male, age 72, unknown 63.1
Median raphe nucleus
nTPM: 69.2
2220 Male, age 76, midline 69.2
Pedunculopontine tegmental nucleus
nTPM: 69.2
1921 Female, age 85, both hemispheres 73.1
2334 Male, age 80, both hemispheres 72.7
2338 Male, age 61, both hemispheres 61.9
Periaquaductal grey, anterior
nTPM: 70.0
1947 Male, age 18, unknown 72.7
1795 Male, age 51, unknown 70.1
2502 Female, age 75, unknown 67.2
Periaquaductal grey, dorsal
nTPM: 66.8
1840 Male, age 53, unknown 68.7
2464 Female, age 72, unknown 67.1
1831 Male, age 72, unknown 66.2
2850 Male, age 76, both hemispheres 65.3
Periaquaductal grey, lateral
nTPM: 71.1
2272 Male, age 74, both hemispheres 80.5
2053 Male, age 18, unknown 67.2
2140 Male, age 76, both hemispheres 65.6
Pretectal area
nTPM: 74.2
2273 Male, age 74, both hemispheres 83.3
2007 Male, age 72, unknown 80.6
1816 Male, age 51, unknown 78.3
1944 Female, age 72, unknown 78.0
1817 Female, age 42, unknown 77.7
2224 Female, age 72, unknown 75.4
1815 Male, age 53, unknown 74.5
2667 Female, age 75, unknown 74.0
2825 Male, age 18, unknown 66.9
2316 Male, age 76, right hemisphere 66.8
2407 Male, age 75, both hemispheres 60.8
Red nucleus
nTPM: 66.8
1821 Female, age 72, unknown 72.6
2785 Male, age 18, unknown 71.3
2725 Female, age 75, unknown 70.2
1954 Female, age 42, unknown 68.8
2503 Female, age 72, unknown 68.6
1904 Male, age 53, unknown 68.0
1865 Male, age 51, unknown 66.0
2227 Male, age 72, unknown 66.0
2823 Male, age 76, right hemisphere 66.0
2769 Male, age 72, unknown 64.7
2588 Male, age 74, left hemisphere 61.2
2584 Male, age 75, left hemisphere 58.5
Substantia nigra
nTPM: 69.2
1916 Female, age 42, unknown 77.7
1889 Female, age 72, unknown 75.5
1851 Male, age 51, unknown 73.2
2241 Male, age 72, unknown 71.4
1941 Male, age 53, unknown 69.9
2409 Female, age 72, unknown 69.5
2590 Female, age 75, unknown 65.7
2583 Male, age 75, right hemisphere 65.4
2699 Male, age 18, unknown 63.5
2665 Male, age 74, both hemispheres 60.0
Superior colliculus
nTPM: 69.1
2261 Male, age 18, unknown 74.8
2087 Female, age 72, unknown 73.1
1796 Male, age 53, unknown 72.9
2587 Male, age 74, left hemisphere 71.2
2668 Female, age 75, unknown 70.7
1895 Male, age 76, right hemisphere 69.7
1913 Female, age 42, unknown 68.0
1839 Male, age 51, unknown 66.3
1995 Male, age 72, unknown 65.5
2664 Male, age 75, both hemispheres 58.5
Ventral tegmental area
nTPM: 71.7
2410 Female, age 72, unknown 77.1
2218 Male, age 76, both hemispheres 74.3
1915 Female, age 42, unknown 73.5
1942 Male, age 51, unknown 69.7
2021 Male, age 53, unknown 68.3
2223 Female, age 72, unknown 67.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.5
Samples: 139

Max nTPM: 139.0
Min nTPM: 40.9
Std nTPM: 18.0
Median nTPM: 71.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 139.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 138.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 134.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 119.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 118.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 114.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 111.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 103.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 102.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 102.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.3
FF:10158-103A5 76 years, female 118.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.4
Pig sample Sample description nTPM
Midbrain
nTPM: 83.3
Samples: 4

Max nTPM: 98.2
Min nTPM: 67.3
Sample A Female 88.7
Sample B Female 67.3
Sample C Male 98.2
Sample D Male 78.9
Periaqueductal gray
nTPM: 63.2
Samples: 3

Max nTPM: 72.2
Min nTPM: 57.4
Sample B Female 59.9
Sample C Male 72.2
Sample D Male 57.4
Substantia nigra
nTPM: 69.6
Samples: 4

Max nTPM: 90.5
Min nTPM: 51.2
Sample A Female 90.5
Sample B Female 58.4
Sample C Male 78.4
Sample D Male 51.2
Superior colliculi
nTPM: 87.5
Samples: 4

Max nTPM: 104.5
Min nTPM: 69.1
Sample A Female 97.5
Sample B Female 69.1
Sample C Male 104.5
Sample D Male 78.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 136.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 136.9
Samples: 4

Max nTPM: 139.4
Min nTPM: 134.2
Sample A Male 139.4
Sample B Male 135.9
Sample C Female 134.2
Sample D Female 138.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69133674 Antisense, RP_050321_02_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.