MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA:32.1 nTPM
GTEx:28.8 nTPM
FANTOM5:82.7 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
1870 Female, age 42, unknown 35.2
1830 Male, age 51, unknown 33.1
1833 Male, age 53, unknown 32.8
2411 Female, age 72, unknown 31.2
2019 Male, age 18, unknown 28.9
1827 Male, age 72, unknown 27.5
2828 Female, age 72, unknown 26.1
2666 Male, age 74, left hemisphere 26.0
2586 Male, age 75, left hemisphere 24.2
2219 Male, age 76, both hemispheres 23.9
Dorsal raphe nucleus
nTPM: 30.8
2750 Male, age 76, both hemispheres 32.4
2016 Female, age 72, unknown 31.9
2298 Female, age 72, unknown 31.3
1828 Male, age 53, unknown 29.6
2047 Male, age 72, unknown 28.5
Inferior colliculus
nTPM: 28.9
2097 Female, age 72, unknown 30.6
1848 Female, age 42, unknown 28.7
1890 Male, age 53, unknown 28.7
2849 Male, age 72, unknown 27.8
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Pedunculopontine tegmental nucleus
nTPM: 32.0
2338 Male, age 61, both hemispheres 37.4
2334 Male, age 80, both hemispheres 30.1
1921 Female, age 85, both hemispheres 28.5
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 27.3
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 30.1
2850 Male, age 76, both hemispheres 33.8
1831 Male, age 72, unknown 29.7
2464 Female, age 72, unknown 29.4
1840 Male, age 53, unknown 27.5
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 31.5
2053 Male, age 18, unknown 29.6
2272 Male, age 74, both hemispheres 29.0
Pretectal area
nTPM: 27.6
2273 Male, age 74, both hemispheres 31.1
2825 Male, age 18, unknown 31.1
2316 Male, age 76, right hemisphere 31.0
2667 Female, age 75, unknown 29.2
2224 Female, age 72, unknown 29.0
1815 Male, age 53, unknown 27.7
2407 Male, age 75, both hemispheres 25.8
1817 Female, age 42, unknown 25.7
2007 Male, age 72, unknown 25.0
1944 Female, age 72, unknown 24.5
1816 Male, age 51, unknown 23.1
Red nucleus
nTPM: 32.1
1821 Female, age 72, unknown 36.7
1904 Male, age 53, unknown 36.6
2823 Male, age 76, right hemisphere 36.1
1954 Female, age 42, unknown 35.4
1865 Male, age 51, unknown 35.3
2227 Male, age 72, unknown 33.3
2769 Male, age 72, unknown 32.1
2503 Female, age 72, unknown 31.6
2785 Male, age 18, unknown 29.4
2725 Female, age 75, unknown 28.5
2588 Male, age 74, left hemisphere 25.8
2584 Male, age 75, left hemisphere 24.3
Substantia nigra
nTPM: 29.0
2409 Female, age 72, unknown 33.2
2241 Male, age 72, unknown 32.2
2590 Female, age 75, unknown 30.3
2699 Male, age 18, unknown 29.7
1889 Female, age 72, unknown 29.0
1851 Male, age 51, unknown 28.7
2583 Male, age 75, right hemisphere 28.3
2665 Male, age 74, both hemispheres 27.2
1916 Female, age 42, unknown 25.8
1941 Male, age 53, unknown 25.8
Superior colliculus
nTPM: 28.6
1913 Female, age 42, unknown 33.5
1995 Male, age 72, unknown 31.0
2587 Male, age 74, left hemisphere 30.8
1895 Male, age 76, right hemisphere 30.2
1839 Male, age 51, unknown 30.1
2668 Female, age 75, unknown 28.4
1796 Male, age 53, unknown 26.8
2087 Female, age 72, unknown 26.5
2261 Male, age 18, unknown 25.3
2664 Male, age 75, both hemispheres 24.0
Ventral tegmental area
nTPM: 28.8
2223 Female, age 72, unknown 30.8
2410 Female, age 72, unknown 30.3
2021 Male, age 53, unknown 29.4
2218 Male, age 76, both hemispheres 28.2
1915 Female, age 42, unknown 27.4
1942 Male, age 51, unknown 26.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.8
Samples: 139

Max nTPM: 50.6
Min nTPM: 12.2
Std nTPM: 7.5
Median nTPM: 28.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 49.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 48.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 45.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 42.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.7
FF:10158-103A5 76 years, female 82.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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