MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.8 nTPM
HPA:52.8 nTPM
GTEx:68.4 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:128.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.3
2411 Female, age 72, unknown 56.0
1870 Female, age 42, unknown 52.3
2019 Male, age 18, unknown 50.6
1827 Male, age 72, unknown 49.7
1833 Male, age 53, unknown 48.8
1830 Male, age 51, unknown 48.0
2219 Male, age 76, both hemispheres 47.6
2828 Female, age 72, unknown 47.5
2666 Male, age 74, left hemisphere 46.7
2586 Male, age 75, left hemisphere 46.0
Dorsal raphe nucleus
nTPM: 50.4
2298 Female, age 72, unknown 54.0
2750 Male, age 76, both hemispheres 52.3
1828 Male, age 53, unknown 49.8
2047 Male, age 72, unknown 48.6
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 47.3
2097 Female, age 72, unknown 51.6
1848 Female, age 42, unknown 46.8
1890 Male, age 53, unknown 46.6
2849 Male, age 72, unknown 44.1
Median raphe nucleus
nTPM: 50.2
2220 Male, age 76, midline 50.2
Pedunculopontine tegmental nucleus
nTPM: 50.1
1921 Female, age 85, both hemispheres 52.5
2334 Male, age 80, both hemispheres 51.1
2338 Male, age 61, both hemispheres 46.8
Periaquaductal grey, anterior
nTPM: 48.3
2502 Female, age 75, unknown 49.3
1947 Male, age 18, unknown 48.9
1795 Male, age 51, unknown 46.7
Periaquaductal grey, dorsal
nTPM: 47.9
1840 Male, age 53, unknown 48.2
1831 Male, age 72, unknown 48.1
2464 Female, age 72, unknown 48.1
2850 Male, age 76, both hemispheres 47.2
Periaquaductal grey, lateral
nTPM: 45.8
2053 Male, age 18, unknown 48.0
2272 Male, age 74, both hemispheres 45.2
2140 Male, age 76, both hemispheres 44.2
Pretectal area
nTPM: 49.8
1815 Male, age 53, unknown 52.6
1816 Male, age 51, unknown 52.6
1944 Female, age 72, unknown 51.6
2007 Male, age 72, unknown 51.5
2224 Female, age 72, unknown 51.3
1817 Female, age 42, unknown 50.9
2667 Female, age 75, unknown 50.5
2825 Male, age 18, unknown 47.5
2316 Male, age 76, right hemisphere 47.4
2273 Male, age 74, both hemispheres 47.0
2407 Male, age 75, both hemispheres 45.0
Red nucleus
nTPM: 49.1
1821 Female, age 72, unknown 56.3
1904 Male, age 53, unknown 51.5
1954 Female, age 42, unknown 50.5
2503 Female, age 72, unknown 49.7
1865 Male, age 51, unknown 49.1
2823 Male, age 76, right hemisphere 48.8
2769 Male, age 72, unknown 48.2
2227 Male, age 72, unknown 47.8
2725 Female, age 75, unknown 47.8
2785 Male, age 18, unknown 47.7
2588 Male, age 74, left hemisphere 47.0
2584 Male, age 75, left hemisphere 44.2
Substantia nigra
nTPM: 52.8
2241 Male, age 72, unknown 60.6
1916 Female, age 42, unknown 56.7
1851 Male, age 51, unknown 56.4
1889 Female, age 72, unknown 54.6
2409 Female, age 72, unknown 53.4
1941 Male, age 53, unknown 50.7
2699 Male, age 18, unknown 50.4
2590 Female, age 75, unknown 49.2
2583 Male, age 75, right hemisphere 48.9
2665 Male, age 74, both hemispheres 47.1
Superior colliculus
nTPM: 48.7
2668 Female, age 75, unknown 50.7
2587 Male, age 74, left hemisphere 50.2
2087 Female, age 72, unknown 50.0
1895 Male, age 76, right hemisphere 49.5
1913 Female, age 42, unknown 49.3
2261 Male, age 18, unknown 48.9
1796 Male, age 53, unknown 48.4
1995 Male, age 72, unknown 47.3
1839 Male, age 51, unknown 47.0
2664 Male, age 75, both hemispheres 45.4
Ventral tegmental area
nTPM: 51.9
2410 Female, age 72, unknown 55.3
1915 Female, age 42, unknown 53.5
2218 Male, age 76, both hemispheres 52.1
2223 Female, age 72, unknown 51.2
1942 Male, age 51, unknown 50.3
2021 Male, age 53, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.4
Samples: 139

Max nTPM: 109.5
Min nTPM: 38.0
Std nTPM: 12.8
Median nTPM: 67.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 109.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 105.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 94.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 93.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 92.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 90.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 90.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 90.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.6
FF:10158-103A5 76 years, female 84.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 38.3
Min nTPM: 25.5
Sample A Female 38.3
Sample B Female 31.2
Sample C Male 26.5
Sample D Male 25.5
Periaqueductal gray
nTPM: 23.2
Samples: 3

Max nTPM: 27.3
Min nTPM: 20.7
Sample B Female 20.7
Sample C Male 27.3
Sample D Male 21.5
Substantia nigra
nTPM: 29.0
Samples: 4

Max nTPM: 38.4
Min nTPM: 22.9
Sample A Female 38.4
Sample B Female 23.6
Sample C Male 31.2
Sample D Male 22.9
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 34.0
Min nTPM: 20.6
Sample A Female 34.0
Sample B Female 20.6
Sample C Male 31.1
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 131.7
Min nTPM: 126.3
Sample A Male 126.7
Sample B Male 131.7
Sample C Female 126.3
Sample D Female 127.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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