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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1198.6 nTPM
HPA:1198.6 nTPM
GTEx:629.0 nTPM
FANTOM5:642.3 Scaled Tags Per Million
Pig:174.0 nTPM
Mouse:1092.9 nTPM
Allen mouse:9.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1198.6
Sample id Sample description nTPM
Amygdala
nTPM: 1088.5
2514 Male, age 75, right hemisphere 1154.6
2517 Female, age 94, left hemisphere 1139.6
2814 Male, age 76, right hemisphere 1087.1
1987 Female, age 91, left hemisphere 1044.5
2695 Female, age 67, right hemisphere 1016.9
Basal amygdala
nTPM: 1180.4
2827 Female, age 67, right hemisphere 1342.5
2685 Female, age 94, left hemisphere 1219.1
2609 Male, age 75, right hemisphere 1179.1
2110 Male, age 80, left hemisphere 1142.5
2243 Female, age 91, right hemisphere 1102.9
1955 Male, age 76, both hemispheres 1096.5
Central amygdala
nTPM: 1198.6
2826 Female, age 94, left hemisphere 1575.2
2239 Male, age 80, left hemisphere 1138.6
2515 Male, age 75, right hemisphere 1111.9
1905 Male, age 76, both hemispheres 1083.8
2701 Female, age 91, right hemisphere 1083.4
Corticomedial amygdala
nTPM: 1152.8
2429 Female, age 94, left hemisphere 1265.9
2535 Female, age 67, right hemisphere 1242.9
2829 Male, age 80, left hemisphere 1140.6
2240 Male, age 76, both hemispheres 1112.9
2428 Male, age 75, right hemisphere 1086.4
2242 Female, age 91, right hemisphere 1068.0
Lateral amygdala
nTPM: 1174.6
2534 Female, age 94, left hemisphere 1380.3
2830 Female, age 67, right hemisphere 1186.4
2516 Male, age 75, right hemisphere 1161.8
2256 Male, age 80, left hemisphere 1149.4
2255 Female, age 91, right hemisphere 1096.7
1883 Male, age 76, both hemispheres 1072.9
Stria terminalis, bed nucleus
nTPM: 1156.4
1974 Female, age 91, both hemispheres 1270.8
2486 Female, age 94, both hemispheres 1160.2
2201 Male, age 74, unknown 1038.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 629.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 629.0
Samples: 152

Max nTPM: 1629.8
Min nTPM: 21.6
Std nTPM: 265.5
Median nTPM: 573.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1629.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1458.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1377.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1328.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1296.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1258.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1204.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1179.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1171.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1098.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1076.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1044.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1019.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1002.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1000.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 986.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 966.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 953.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 948.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 929.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 909.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 891.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 875.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 862.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 855.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 848.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 847.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 842.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 839.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 837.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 829.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 820.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 819.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 808.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 798.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 787.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 786.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 783.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 749.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 748.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 730.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 728.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 726.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 718.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 711.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 702.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 700.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 696.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 696.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 691.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 690.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 677.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 673.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 667.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 666.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 663.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 659.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 652.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 650.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 645.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 645.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 644.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 636.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 632.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 617.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 608.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 602.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 600.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 593.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 591.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 585.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 582.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 578.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 577.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 577.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 573.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 573.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 569.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 565.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 564.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 561.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 553.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 549.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 544.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 539.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 536.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 533.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 533.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 533.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 521.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 518.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 515.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 515.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 514.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 514.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 513.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 492.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 490.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 489.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 487.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 476.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 473.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 471.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 471.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 468.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 465.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 462.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 461.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 461.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 459.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 458.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 455.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 453.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 453.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 452.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 448.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 441.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 438.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 432.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 426.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 420.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 413.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 408.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 405.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 405.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 401.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 400.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 397.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 385.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 383.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 378.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 373.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 371.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 366.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 362.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 358.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 348.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 343.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 342.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 340.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 335.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 314.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 305.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 299.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 277.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 270.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 264.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 261.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 238.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 235.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 642.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 642.3
FF:10151-102I7 76 years, female 642.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.0
Pig sample Sample description nTPM
Amygdala
nTPM: 174.0
Samples: 4

Max nTPM: 219.6
Min nTPM: 131.5
Sample A Female 219.6
Sample B Female 159.1
Sample C Male 131.5
Sample D Male 185.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1092.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1092.9
Samples: 4

Max nTPM: 1444.1
Min nTPM: 864.4
Sample A Male 864.4
Sample B Male 1064.8
Sample C Female 1444.1
Sample D Female 998.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.4
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 9.4
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 8.4

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