MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1046.7 nTPM
HPA:1046.7 nTPM
GTEx:68.0 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:95.5 nTPM
Mouse:538.3 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1046.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1009.0
2219 Male, age 76, both hemispheres 1032.4
1827 Male, age 72, unknown 1022.3
2666 Male, age 74, left hemisphere 1013.1
2586 Male, age 75, left hemisphere 1010.0
2019 Male, age 18, unknown 1009.9
1870 Female, age 42, unknown 1006.1
2828 Female, age 72, unknown 1004.3
2411 Female, age 72, unknown 1002.5
1833 Male, age 53, unknown 996.3
1830 Male, age 51, unknown 992.7
Dorsal raphe nucleus
nTPM: 1003.3
2750 Male, age 76, both hemispheres 1017.8
2047 Male, age 72, unknown 1014.9
1828 Male, age 53, unknown 1007.3
2298 Female, age 72, unknown 999.0
2016 Female, age 72, unknown 977.5
Inferior colliculus
nTPM: 1046.7
2097 Female, age 72, unknown 1101.9
1848 Female, age 42, unknown 1038.7
1890 Male, age 53, unknown 1027.1
2849 Male, age 72, unknown 1018.8
Median raphe nucleus
nTPM: 1040.1
2220 Male, age 76, midline 1040.1
Pedunculopontine tegmental nucleus
nTPM: 1022.2
1921 Female, age 85, both hemispheres 1034.7
2334 Male, age 80, both hemispheres 1021.6
2338 Male, age 61, both hemispheres 1010.4
Periaquaductal grey, anterior
nTPM: 1016.3
2502 Female, age 75, unknown 1018.9
1795 Male, age 51, unknown 1016.7
1947 Male, age 18, unknown 1013.4
Periaquaductal grey, dorsal
nTPM: 1000.8
2464 Female, age 72, unknown 1016.3
1831 Male, age 72, unknown 997.2
2850 Male, age 76, both hemispheres 995.1
1840 Male, age 53, unknown 994.8
Periaquaductal grey, lateral
nTPM: 981.2
2140 Male, age 76, both hemispheres 993.1
2053 Male, age 18, unknown 990.3
2272 Male, age 74, both hemispheres 960.0
Pretectal area
nTPM: 1019.8
1944 Female, age 72, unknown 1066.7
1816 Male, age 51, unknown 1057.0
2667 Female, age 75, unknown 1046.7
2007 Male, age 72, unknown 1039.6
1817 Female, age 42, unknown 1029.5
1815 Male, age 53, unknown 1017.6
2316 Male, age 76, right hemisphere 1006.5
2224 Female, age 72, unknown 1000.7
2825 Male, age 18, unknown 998.4
2407 Male, age 75, both hemispheres 991.1
2273 Male, age 74, both hemispheres 963.7
Red nucleus
nTPM: 995.9
2588 Male, age 74, left hemisphere 1017.2
1821 Female, age 72, unknown 1008.6
2725 Female, age 75, unknown 1005.5
2785 Male, age 18, unknown 1005.4
1954 Female, age 42, unknown 997.2
2503 Female, age 72, unknown 996.8
2227 Male, age 72, unknown 991.9
2769 Male, age 72, unknown 991.5
2823 Male, age 76, right hemisphere 989.5
1865 Male, age 51, unknown 988.7
1904 Male, age 53, unknown 981.8
2584 Male, age 75, left hemisphere 976.5
Substantia nigra
nTPM: 1010.1
1941 Male, age 53, unknown 1055.7
1916 Female, age 42, unknown 1043.5
2241 Male, age 72, unknown 1033.7
1889 Female, age 72, unknown 1031.9
1851 Male, age 51, unknown 1023.7
2409 Female, age 72, unknown 1002.2
2699 Male, age 18, unknown 996.9
2665 Male, age 74, both hemispheres 986.3
2583 Male, age 75, right hemisphere 970.4
2590 Female, age 75, unknown 957.0
Superior colliculus
nTPM: 1021.8
1895 Male, age 76, right hemisphere 1069.7
2668 Female, age 75, unknown 1068.3
2087 Female, age 72, unknown 1034.7
2587 Male, age 74, left hemisphere 1034.1
1796 Male, age 53, unknown 1031.8
2261 Male, age 18, unknown 1012.8
1839 Male, age 51, unknown 1006.3
2664 Male, age 75, both hemispheres 991.3
1913 Female, age 42, unknown 990.0
1995 Male, age 72, unknown 979.4
Ventral tegmental area
nTPM: 1019.6
2223 Female, age 72, unknown 1039.5
2218 Male, age 76, both hemispheres 1036.5
1915 Female, age 42, unknown 1028.2
2410 Female, age 72, unknown 1009.3
2021 Male, age 53, unknown 1002.6
1942 Male, age 51, unknown 1001.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.0
Samples: 139

Max nTPM: 305.6
Min nTPM: 16.9
Std nTPM: 41.1
Median nTPM: 59.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 305.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 240.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 201.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 180.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 177.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 163.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 130.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 127.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 124.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 124.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 116.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.0
FF:10158-103A5 76 years, female 50.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.5
Pig sample Sample description nTPM
Midbrain
nTPM: 91.0
Samples: 4

Max nTPM: 139.6
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 58.0
Sample C Male 139.6
Sample D Male 135.6
Periaqueductal gray
nTPM: 61.5
Samples: 3

Max nTPM: 77.3
Min nTPM: 53.2
Sample B Female 53.2
Sample C Male 77.3
Sample D Male 54.0
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 106.0
Min nTPM: 40.1
Sample A Female 106.0
Sample B Female 50.4
Sample C Male 103.1
Sample D Male 40.1
Superior colliculi
nTPM: 95.5
Samples: 4

Max nTPM: 130.8
Min nTPM: 37.6
Sample A Female 100.2
Sample B Female 37.6
Sample C Male 130.8
Sample D Male 113.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 538.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 538.4
Samples: 4

Max nTPM: 558.9
Min nTPM: 516.5
Sample A Male 528.2
Sample B Male 516.5
Sample C Female 558.9
Sample D Female 549.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 13.7
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 12.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.