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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1113.3 nTPM
HPA:1113.3 nTPM
FANTOM5:459.5 Scaled Tags Per Million
Pig:107.6 nTPM
Allen mouse:13.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 1113.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1022.6
1984 Male, age 76, both hemispheres 1044.2
2188 Female, age 91, both hemispheres 1026.8
2301 Female, age 85, both hemispheres 1022.1
2090 Male, age 80, both hemispheres 997.2
Dorsal cochlear nucleus
nTPM: 1009.4
2187 Female, age 91, both hemispheres 1033.5
2370 Male, age 61, both hemispheres 1024.8
2058 Male, age 76, both hemispheres 1011.7
2378 Male, age 80, both hemispheres 994.9
2802 Male, age 74, right hemisphere 981.9
Dorsal tegmental nucleus
nTPM: 1017.2
2083 Male, age 80, both hemispheres 1032.9
2358 Male, age 61, both hemispheres 1027.8
1936 Male, age 76, left hemisphere 1015.0
2326 Male, age 74, both hemispheres 993.1
Dorsolateral tegmental area
nTPM: 1001.9
2141 Male, age 76, both hemispheres 1022.7
2654 Male, age 80, both hemispheres 1021.7
2751 Female, age 85, both hemispheres 1010.8
2360 Male, age 74, both hemispheres 978.0
2337 Male, age 61, both hemispheres 976.4
Kolliker-Fuse nucleus
nTPM: 1075.6
2793 Female, age 91, left hemisphere 1154.0
2163 Male, age 80, both hemispheres 1080.2
2315 Male, age 76, right hemisphere 992.7
Lateral lemniscal nuclei
nTPM: 1107.4
2320 Female, age 91, left hemisphere 1133.5
2169 Male, age 76, both hemispheres 1131.4
2036 Male, age 80, both hemispheres 1118.0
2453 Male, age 74, right hemisphere 1103.6
2746 Female, age 85, left hemisphere 1050.3
Lateral parabrachial nucleus
nTPM: 1026.0
2139 Female, age 85, right hemisphere 1064.5
2790 Male, age 61, both hemispheres 1033.8
2013 Male, age 80, both hemispheres 1021.8
2792 Male, age 76, both hemispheres 983.8
Lateral vestibular nucleus
nTPM: 1047.1
2184 Male, age 76, both hemispheres 1077.7
2311 Male, age 80, both hemispheres 1016.6
Locus coeruleus
nTPM: 1041.7
2788 Male, age 74, unknown 1064.0
2014 Male, age 55, unknown 1050.9
2123 Female, age 91, both hemispheres 1046.5
2162 Male, age 80, both hemispheres 1040.2
1980 Male, age 76, both hemispheres 1039.5
2720 Male, age 74, both hemispheres 1031.9
2317 Female, age 72, unknown 1018.8
Medial olivary nucleus
nTPM: 981.9
2851 Male, age 80, both hemispheres 1008.4
1962 Male, age 76, both hemispheres 979.8
2138 Female, age 91, both hemispheres 972.2
1943 Male, age 61, both hemispheres 967.3
Medial parabrachial nucleus
nTPM: 1030.2
2854 Male, age 80, both hemispheres 1050.0
2156 Male, age 61, both hemispheres 1036.8
2170 Female, age 91, both hemispheres 1027.0
2786 Male, age 76, both hemispheres 1023.0
2463 Female, age 85, right hemisphere 1014.3
Medial periolivary nuclei
nTPM: 1072.9
2171 Female, age 85, both hemispheres 1133.4
2063 Male, age 76, both hemispheres 1129.4
2458 Female, age 91, both hemispheres 1066.5
2081 Male, age 80, both hemispheres 1019.4
2791 Male, age 74, right hemisphere 1015.5
Motor facial nucleus
nTPM: 1089.6
2062 Male, age 76, both hemispheres 1127.1
2795 Female, age 91, both hemispheres 1125.4
2327 Male, age 80, both hemispheres 1117.8
2365 Male, age 74, right hemisphere 1072.1
2697 Female, age 85, both hemispheres 1068.3
2126 Male, age 61, both hemispheres 1027.1
Motor trigeminal nucleus
nTPM: 1043.0
2079 Male, age 80, both hemispheres 1095.0
2560 Male, age 74, both hemispheres 1046.2
2309 Male, age 76, both hemispheres 1027.3
2335 Male, age 61, both hemispheres 1026.6
2321 Female, age 91, both hemispheres 1019.8
Nuclei of the trapezoid body
nTPM: 1113.3
2159 Male, age 61, both hemispheres 1137.2
2735 Female, age 85, both hemispheres 1128.2
1983 Male, age 76, both hemispheres 1119.2
2368 Female, age 91, both hemispheres 1108.1
2166 Male, age 80, both hemispheres 1074.0
Paramedian reticular nucleus
nTPM: 1037.3
2050 Female, age 85, both hemispheres 1073.5
2057 Male, age 80, both hemispheres 1034.5
2313 Male, age 61, both hemispheres 1030.3
2052 Male, age 76, both hemispheres 1010.9
Pontine nuclei
nTPM: 1084.5
2787 Female, age 85, both hemispheres 1153.3
2727 Male, age 61, right hemisphere 1135.1
1968 Male, age 76, left hemisphere 1110.6
1863 Male, age 55, unknown 1105.8
2109 Female, age 72, unknown 1062.1
2319 Female, age 91, both hemispheres 1051.5
2115 Male, age 80, left hemisphere 1046.2
2454 Male, age 74, left hemisphere 1011.6
Pontine raphe nucleus
nTPM: 1060.9
2122 Female, age 85, midline 1094.0
2853 Male, age 76, midline 1027.8
Posteroventral cochlear nucleus
nTPM: 1021.2
2752 Female, age 85, both hemispheres 1044.0
2371 Male, age 61, both hemispheres 1030.2
2070 Male, age 76, both hemispheres 1029.7
2341 Male, age 80, both hemispheres 1024.4
2135 Female, age 91, both hemispheres 977.8
Principal sensory trigeminal nucleus
nTPM: 1088.5
2158 Male, age 61, both hemispheres 1149.2
2008 Male, age 80, left hemisphere 1095.9
2324 Male, age 76, both hemispheres 1056.1
2367 Female, age 91, left hemisphere 1052.9
Reticular pontine nucleus, caudal
nTPM: 1075.4
2332 Male, age 80, right hemisphere 1110.2
2457 Female, age 91, both hemispheres 1106.7
2092 Male, age 76, both hemispheres 1074.3
2559 Male, age 74, both hemispheres 1010.4
Reticular pontine nucleus, oral
nTPM: 1064.6
2366 Female, age 91, both hemispheres 1183.9
2012 Female, age 85, both hemispheres 1053.8
2361 Male, age 74, both hemispheres 1039.8
2167 Male, age 76, both hemispheres 1025.5
1939 Male, age 80, both hemispheres 1020.0
Reticulotegmental nucleus
nTPM: 1042.0
2325 Male, age 76, both hemispheres 1069.8
2322 Female, age 91, both hemispheres 1048.8
2333 Male, age 80, both hemispheres 1032.0
2452 Male, age 74, both hemispheres 1017.4
Spinal trigeminal nucleus, oral
nTPM: 1068.0
1978 Male, age 76, both hemispheres 1089.9
2164 Male, age 80, both hemispheres 1066.6
2737 Female, age 85, both hemispheres 1047.5
Subcoeruleus area
nTPM: 1032.2
2089 Male, age 76, left hemisphere 1081.2
1958 Male, age 80, both hemispheres 1059.5
2323 Female, age 91, left hemisphere 1023.6
2451 Male, age 74, both hemispheres 1003.2
2369 Female, age 85, left hemisphere 993.6
Superior olive
nTPM: 1078.3
2561 Female, age 91, both hemispheres 1107.9
1875 Female, age 85, both hemispheres 1104.1
2020 Male, age 76, both hemispheres 1090.2
2329 Male, age 80, right hemisphere 1073.0
2364 Male, age 74, right hemisphere 1016.4
Superior vestibular nucleus
nTPM: 1004.2
2015 Male, age 80, both hemispheres 1022.2
2061 Male, age 76, both hemispheres 1007.1
2383 Male, age 74, both hemispheres 983.3
Ventral periolivary nuclei
nTPM: 1112.3
2165 Male, age 80, both hemispheres 1140.1
2794 Female, age 91, left hemisphere 1127.4
2130 Female, age 85, both hemispheres 1109.2
2023 Male, age 76, both hemispheres 1072.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1052.5
1959 Male, age 76, both hemispheres 1080.5
2449 Male, age 74, both hemispheres 1067.9
2161 Male, age 80, both hemispheres 1063.8
2456 Female, age 91, both hemispheres 1046.0
2840 Female, age 85, both hemispheres 1045.5
2359 Male, age 61, both hemispheres 1011.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 459.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 298.8
FF:10182-103D2 60 years, female 405.1
FF:10165-103B3 76 years, female 192.4
Pons
Scaled Tags Per Million: 459.5
FF:10033-101E6 18-54 years, mixed 459.5

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 107.6
Pig sample Sample description nTPM
Pons
nTPM: 107.6
Samples: 4

Max nTPM: 149.5
Min nTPM: 82.9
Sample A Female 149.5
Sample B Female 82.9
Sample C Male 95.1
Sample D Male 103.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 13.0
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 13.0
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.