MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:298.8 nTPM
HPA:298.8 nTPM
GTEx:66.5 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Mouse:829.1 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 298.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 273.4
2666 Male, age 74, left hemisphere 301.4
1827 Male, age 72, unknown 289.6
2219 Male, age 76, both hemispheres 280.4
2411 Female, age 72, unknown 274.1
2019 Male, age 18, unknown 273.6
1870 Female, age 42, unknown 271.4
2828 Female, age 72, unknown 267.1
2586 Male, age 75, left hemisphere 262.4
1833 Male, age 53, unknown 258.1
1830 Male, age 51, unknown 255.7
Dorsal raphe nucleus
nTPM: 265.6
2298 Female, age 72, unknown 283.0
2047 Male, age 72, unknown 270.2
1828 Male, age 53, unknown 267.5
2750 Male, age 76, both hemispheres 257.9
2016 Female, age 72, unknown 249.5
Inferior colliculus
nTPM: 298.8
2097 Female, age 72, unknown 318.8
1848 Female, age 42, unknown 293.7
1890 Male, age 53, unknown 293.4
2849 Male, age 72, unknown 289.4
Median raphe nucleus
nTPM: 277.2
2220 Male, age 76, midline 277.2
Pedunculopontine tegmental nucleus
nTPM: 274.0
1921 Female, age 85, both hemispheres 300.0
2334 Male, age 80, both hemispheres 267.9
2338 Male, age 61, both hemispheres 254.2
Periaquaductal grey, anterior
nTPM: 279.1
2502 Female, age 75, unknown 283.5
1795 Male, age 51, unknown 278.7
1947 Male, age 18, unknown 275.0
Periaquaductal grey, dorsal
nTPM: 278.4
1840 Male, age 53, unknown 295.5
2464 Female, age 72, unknown 275.0
1831 Male, age 72, unknown 272.5
2850 Male, age 76, both hemispheres 270.5
Periaquaductal grey, lateral
nTPM: 263.4
2053 Male, age 18, unknown 268.6
2140 Male, age 76, both hemispheres 262.1
2272 Male, age 74, both hemispheres 259.5
Pretectal area
nTPM: 292.2
1944 Female, age 72, unknown 333.8
1816 Male, age 51, unknown 324.1
1817 Female, age 42, unknown 324.0
2007 Male, age 72, unknown 317.5
1815 Male, age 53, unknown 299.7
2667 Female, age 75, unknown 290.5
2224 Female, age 72, unknown 284.3
2825 Male, age 18, unknown 263.9
2316 Male, age 76, right hemisphere 262.6
2273 Male, age 74, both hemispheres 258.0
2407 Male, age 75, both hemispheres 255.7
Red nucleus
nTPM: 256.7
2785 Male, age 18, unknown 277.9
2588 Male, age 74, left hemisphere 266.1
2725 Female, age 75, unknown 266.0
1821 Female, age 72, unknown 263.1
2503 Female, age 72, unknown 257.3
1954 Female, age 42, unknown 254.8
2227 Male, age 72, unknown 252.4
2769 Male, age 72, unknown 252.2
1865 Male, age 51, unknown 251.9
2584 Male, age 75, left hemisphere 247.0
2823 Male, age 76, right hemisphere 246.3
1904 Male, age 53, unknown 245.5
Substantia nigra
nTPM: 264.7
1889 Female, age 72, unknown 302.4
2665 Male, age 74, both hemispheres 282.8
1941 Male, age 53, unknown 273.1
1916 Female, age 42, unknown 264.5
2241 Male, age 72, unknown 263.3
1851 Male, age 51, unknown 260.2
2699 Male, age 18, unknown 252.7
2590 Female, age 75, unknown 250.7
2409 Female, age 72, unknown 249.6
2583 Male, age 75, right hemisphere 248.0
Superior colliculus
nTPM: 276.9
2087 Female, age 72, unknown 303.0
1895 Male, age 76, right hemisphere 293.6
1796 Male, age 53, unknown 288.6
2261 Male, age 18, unknown 285.9
1839 Male, age 51, unknown 276.1
2668 Female, age 75, unknown 273.3
2587 Male, age 74, left hemisphere 270.6
2664 Male, age 75, both hemispheres 261.7
1913 Female, age 42, unknown 259.7
1995 Male, age 72, unknown 256.3
Ventral tegmental area
nTPM: 262.2
2223 Female, age 72, unknown 266.7
2410 Female, age 72, unknown 266.3
2218 Male, age 76, both hemispheres 265.6
1942 Male, age 51, unknown 263.4
1915 Female, age 42, unknown 261.7
2021 Male, age 53, unknown 249.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.5
Samples: 139

Max nTPM: 213.8
Min nTPM: 10.8
Std nTPM: 35.8
Median nTPM: 61.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 213.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 204.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 186.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 176.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 140.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 129.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 127.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 124.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 121.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 119.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.2
FF:10158-103A5 76 years, female 79.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 829.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 829.1
Samples: 4

Max nTPM: 854.7
Min nTPM: 808.3
Sample A Male 808.3
Sample B Male 822.8
Sample C Female 854.7
Sample D Female 830.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
72718 Antisense, RP_040407_01_H11, Mouse strain C57BL/6J (56 days, male) 17.7

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