MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1538.2 nTPM
HPA:1538.2 nTPM
GTEx:1650.3 nTPM
FANTOM5:535.1 Scaled Tags Per Million
Pig:96.9 nTPM
Mouse:391.4 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1538.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1507.4
2666 Male, age 74, left hemisphere 1536.6
1870 Female, age 42, unknown 1533.6
1830 Male, age 51, unknown 1523.9
2411 Female, age 72, unknown 1516.5
1833 Male, age 53, unknown 1514.8
2828 Female, age 72, unknown 1513.3
2219 Male, age 76, both hemispheres 1490.2
2019 Male, age 18, unknown 1487.5
2586 Male, age 75, left hemisphere 1480.4
1827 Male, age 72, unknown 1477.0
Dorsal raphe nucleus
nTPM: 1510.4
2016 Female, age 72, unknown 1532.6
2750 Male, age 76, both hemispheres 1521.0
2298 Female, age 72, unknown 1511.7
1828 Male, age 53, unknown 1499.2
2047 Male, age 72, unknown 1487.3
Inferior colliculus
nTPM: 1496.4
2849 Male, age 72, unknown 1503.5
1890 Male, age 53, unknown 1503.1
1848 Female, age 42, unknown 1491.0
2097 Female, age 72, unknown 1487.8
Median raphe nucleus
nTPM: 1497.2
2220 Male, age 76, midline 1497.2
Pedunculopontine tegmental nucleus
nTPM: 1533.5
2338 Male, age 61, both hemispheres 1556.3
2334 Male, age 80, both hemispheres 1554.3
1921 Female, age 85, both hemispheres 1489.7
Periaquaductal grey, anterior
nTPM: 1493.2
2502 Female, age 75, unknown 1527.6
1947 Male, age 18, unknown 1476.4
1795 Male, age 51, unknown 1475.7
Periaquaductal grey, dorsal
nTPM: 1503.3
2850 Male, age 76, both hemispheres 1528.1
1831 Male, age 72, unknown 1501.5
1840 Male, age 53, unknown 1500.2
2464 Female, age 72, unknown 1483.3
Periaquaductal grey, lateral
nTPM: 1499.9
2053 Male, age 18, unknown 1521.9
2140 Male, age 76, both hemispheres 1509.3
2272 Male, age 74, both hemispheres 1468.7
Pretectal area
nTPM: 1489.9
1815 Male, age 53, unknown 1518.7
2224 Female, age 72, unknown 1504.4
2316 Male, age 76, right hemisphere 1503.8
2825 Male, age 18, unknown 1499.0
1817 Female, age 42, unknown 1495.9
2407 Male, age 75, both hemispheres 1493.7
2007 Male, age 72, unknown 1489.0
1944 Female, age 72, unknown 1476.7
2667 Female, age 75, unknown 1474.5
2273 Male, age 74, both hemispheres 1471.9
1816 Male, age 51, unknown 1461.3
Red nucleus
nTPM: 1538.2
2503 Female, age 72, unknown 1577.3
1865 Male, age 51, unknown 1576.3
1821 Female, age 72, unknown 1560.2
1904 Male, age 53, unknown 1551.6
2725 Female, age 75, unknown 1541.3
2227 Male, age 72, unknown 1538.9
2769 Male, age 72, unknown 1534.4
1954 Female, age 42, unknown 1521.6
2584 Male, age 75, left hemisphere 1521.1
2823 Male, age 76, right hemisphere 1517.0
2785 Male, age 18, unknown 1515.1
2588 Male, age 74, left hemisphere 1503.4
Substantia nigra
nTPM: 1528.2
2699 Male, age 18, unknown 1618.9
1851 Male, age 51, unknown 1566.3
2665 Male, age 74, both hemispheres 1554.4
2409 Female, age 72, unknown 1535.6
1889 Female, age 72, unknown 1523.6
1916 Female, age 42, unknown 1520.5
2241 Male, age 72, unknown 1508.8
2590 Female, age 75, unknown 1504.9
1941 Male, age 53, unknown 1488.8
2583 Male, age 75, right hemisphere 1460.5
Superior colliculus
nTPM: 1515.0
1995 Male, age 72, unknown 1589.2
1913 Female, age 42, unknown 1566.3
2587 Male, age 74, left hemisphere 1564.7
1839 Male, age 51, unknown 1506.9
2668 Female, age 75, unknown 1506.8
1796 Male, age 53, unknown 1498.2
1895 Male, age 76, right hemisphere 1493.4
2664 Male, age 75, both hemispheres 1487.4
2087 Female, age 72, unknown 1468.7
2261 Male, age 18, unknown 1468.2
Ventral tegmental area
nTPM: 1529.2
1915 Female, age 42, unknown 1548.9
2410 Female, age 72, unknown 1543.5
2223 Female, age 72, unknown 1539.9
2021 Male, age 53, unknown 1532.1
2218 Male, age 76, both hemispheres 1510.4
1942 Male, age 51, unknown 1500.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1650.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1650.3
Samples: 139

Max nTPM: 4908.1
Min nTPM: 491.2
Std nTPM: 683.3
Median nTPM: 1553.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4908.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4228.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3970.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3600.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2938.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2924.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2901.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2878.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2748.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2703.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2692.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 535.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 535.1
FF:10158-103A5 76 years, female 535.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.9
Pig sample Sample description nTPM
Midbrain
nTPM: 87.0
Samples: 4

Max nTPM: 133.1
Min nTPM: 58.0
Sample A Female 133.1
Sample B Female 89.5
Sample C Male 67.2
Sample D Male 58.0
Periaqueductal gray
nTPM: 63.1
Samples: 3

Max nTPM: 70.6
Min nTPM: 55.0
Sample B Female 70.6
Sample C Male 63.8
Sample D Male 55.0
Substantia nigra
nTPM: 90.5
Samples: 4

Max nTPM: 139.5
Min nTPM: 63.5
Sample A Female 139.5
Sample B Female 94.1
Sample C Male 63.5
Sample D Male 64.7
Superior colliculi
nTPM: 96.9
Samples: 4

Max nTPM: 127.0
Min nTPM: 73.3
Sample A Female 127.0
Sample B Female 109.4
Sample C Male 78.0
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 391.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 391.4
Samples: 4

Max nTPM: 435.4
Min nTPM: 351.8
Sample A Male 435.4
Sample B Male 398.7
Sample C Female 351.8
Sample D Female 379.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
100143515 Antisense, RP_110407_01_E05, Mouse strain C57BL/6J (56 days, male) 4.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.