MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA:40.8 nTPM
GTEx:50.9 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:9.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.0
2586 Male, age 75, left hemisphere 45.2
1830 Male, age 51, unknown 37.7
1833 Male, age 53, unknown 37.5
2828 Female, age 72, unknown 36.0
1870 Female, age 42, unknown 35.0
2666 Male, age 74, left hemisphere 33.6
2411 Female, age 72, unknown 32.2
2019 Male, age 18, unknown 31.8
1827 Male, age 72, unknown 31.1
2219 Male, age 76, both hemispheres 29.8
Dorsal raphe nucleus
nTPM: 37.6
2047 Male, age 72, unknown 42.2
2016 Female, age 72, unknown 41.0
1828 Male, age 53, unknown 37.9
2750 Male, age 76, both hemispheres 35.1
2298 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 34.5
1890 Male, age 53, unknown 36.7
2849 Male, age 72, unknown 36.4
1848 Female, age 42, unknown 34.1
2097 Female, age 72, unknown 30.7
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Pedunculopontine tegmental nucleus
nTPM: 34.0
2338 Male, age 61, both hemispheres 37.0
2334 Male, age 80, both hemispheres 32.8
1921 Female, age 85, both hemispheres 32.2
Periaquaductal grey, anterior
nTPM: 32.1
1947 Male, age 18, unknown 32.6
2502 Female, age 75, unknown 32.0
1795 Male, age 51, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 36.8
2850 Male, age 76, both hemispheres 41.6
1831 Male, age 72, unknown 38.0
1840 Male, age 53, unknown 37.3
2464 Female, age 72, unknown 30.4
Periaquaductal grey, lateral
nTPM: 36.6
2140 Male, age 76, both hemispheres 39.7
2053 Male, age 18, unknown 36.7
2272 Male, age 74, both hemispheres 33.4
Pretectal area
nTPM: 34.8
2407 Male, age 75, both hemispheres 40.2
2667 Female, age 75, unknown 40.0
1944 Female, age 72, unknown 36.4
2316 Male, age 76, right hemisphere 35.5
1815 Male, age 53, unknown 35.4
2825 Male, age 18, unknown 34.6
2224 Female, age 72, unknown 33.4
1817 Female, age 42, unknown 32.9
2273 Male, age 74, both hemispheres 32.7
1816 Male, age 51, unknown 32.6
2007 Male, age 72, unknown 29.1
Red nucleus
nTPM: 37.0
1954 Female, age 42, unknown 39.5
2584 Male, age 75, left hemisphere 39.5
1865 Male, age 51, unknown 38.6
1821 Female, age 72, unknown 38.5
2769 Male, age 72, unknown 37.6
1904 Male, age 53, unknown 37.5
2823 Male, age 76, right hemisphere 37.5
2227 Male, age 72, unknown 37.3
2503 Female, age 72, unknown 37.1
2588 Male, age 74, left hemisphere 34.5
2725 Female, age 75, unknown 34.1
2785 Male, age 18, unknown 31.7
Substantia nigra
nTPM: 40.8
2699 Male, age 18, unknown 52.6
1916 Female, age 42, unknown 46.5
2409 Female, age 72, unknown 45.4
1851 Male, age 51, unknown 42.4
2583 Male, age 75, right hemisphere 39.8
2665 Male, age 74, both hemispheres 38.8
2590 Female, age 75, unknown 37.6
1889 Female, age 72, unknown 37.2
2241 Male, age 72, unknown 34.3
1941 Male, age 53, unknown 33.5
Superior colliculus
nTPM: 35.5
1995 Male, age 72, unknown 43.3
1913 Female, age 42, unknown 38.1
2664 Male, age 75, both hemispheres 37.4
2668 Female, age 75, unknown 35.7
2587 Male, age 74, left hemisphere 34.5
2261 Male, age 18, unknown 33.8
1796 Male, age 53, unknown 33.7
1839 Male, age 51, unknown 33.1
2087 Female, age 72, unknown 32.6
1895 Male, age 76, right hemisphere 32.4
Ventral tegmental area
nTPM: 38.2
2223 Female, age 72, unknown 40.0
2021 Male, age 53, unknown 39.1
1915 Female, age 42, unknown 38.5
2218 Male, age 76, both hemispheres 37.6
2410 Female, age 72, unknown 36.9
1942 Male, age 51, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.9
Samples: 139

Max nTPM: 95.7
Min nTPM: 17.6
Std nTPM: 11.9
Median nTPM: 49.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 77.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 76.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 75.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 71.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 70.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 70.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 69.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.3
FF:10158-103A5 76 years, female 147.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Midbrain
nTPM: 33.2
Samples: 4

Max nTPM: 50.0
Min nTPM: 22.6
Sample A Female 50.0
Sample B Female 30.8
Sample C Male 29.4
Sample D Male 22.6
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 30.8
Min nTPM: 26.8
Sample B Female 29.5
Sample C Male 30.8
Sample D Male 26.8
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 38.5
Min nTPM: 32.2
Sample A Female 37.3
Sample B Female 32.2
Sample C Male 38.5
Sample D Male 34.8
Superior colliculi
nTPM: 30.2
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.9
Sample A Female 31.0
Sample B Female 30.3
Sample C Male 28.9
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 11.4
Min nTPM: 6.4
Sample A Male 10.2
Sample B Male 6.4
Sample C Female 11.4
Sample D Female 11.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
248560 Antisense, RP_040609_01_A02, Mouse strain C57BL/6J (56 days, male) 2.7
77620417 Antisense, RP_070205_01_G10, Mouse strain C57BL/6J (56 days, male) 2.3
293694 Antisense, RP_040609_01_A02, Mouse strain C57BL/6J (56 days, male) 2.2
77414923 Antisense, RP_070205_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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