MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:70.8 nTPM
FANTOM5:62.4 Scaled Tags Per Million
Pig:129.4 nTPM
Mouse:501.6 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
2019 Male, age 18, unknown 52.1
2666 Male, age 74, left hemisphere 25.3
1827 Male, age 72, unknown 24.8
2219 Male, age 76, both hemispheres 24.7
2586 Male, age 75, left hemisphere 20.2
1833 Male, age 53, unknown 13.1
2411 Female, age 72, unknown 11.9
1870 Female, age 42, unknown 9.8
2828 Female, age 72, unknown 8.9
1830 Male, age 51, unknown 6.9
Dorsal raphe nucleus
nTPM: 8.8
2298 Female, age 72, unknown 16.4
1828 Male, age 53, unknown 16.2
2047 Male, age 72, unknown 10.7
2750 Male, age 76, both hemispheres 0.9
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 44.4
1848 Female, age 42, unknown 31.8
2849 Male, age 72, unknown 24.5
1890 Male, age 53, unknown 23.1
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Pedunculopontine tegmental nucleus
nTPM: 14.6
1921 Female, age 85, both hemispheres 24.1
2334 Male, age 80, both hemispheres 13.3
2338 Male, age 61, both hemispheres 6.6
Periaquaductal grey, anterior
nTPM: 6.8
1795 Male, age 51, unknown 8.2
2502 Female, age 75, unknown 6.8
1947 Male, age 18, unknown 5.3
Periaquaductal grey, dorsal
nTPM: 8.2
1840 Male, age 53, unknown 16.6
1831 Male, age 72, unknown 8.5
2464 Female, age 72, unknown 3.8
2850 Male, age 76, both hemispheres 3.8
Periaquaductal grey, lateral
nTPM: 6.8
2272 Male, age 74, both hemispheres 17.8
2053 Male, age 18, unknown 1.4
2140 Male, age 76, both hemispheres 1.2
Pretectal area
nTPM: 42.2
1817 Female, age 42, unknown 85.8
1816 Male, age 51, unknown 83.6
2007 Male, age 72, unknown 77.8
1944 Female, age 72, unknown 76.8
1815 Male, age 53, unknown 50.4
2667 Female, age 75, unknown 36.4
2224 Female, age 72, unknown 16.8
2407 Male, age 75, both hemispheres 15.3
2273 Male, age 74, both hemispheres 11.6
2825 Male, age 18, unknown 6.1
2316 Male, age 76, right hemisphere 3.2
Red nucleus
nTPM: 9.9
2785 Male, age 18, unknown 44.2
1821 Female, age 72, unknown 20.2
2725 Female, age 75, unknown 12.5
2584 Male, age 75, left hemisphere 11.0
1954 Female, age 42, unknown 9.0
2823 Male, age 76, right hemisphere 4.6
2769 Male, age 72, unknown 3.8
1865 Male, age 51, unknown 3.5
2503 Female, age 72, unknown 3.4
2227 Male, age 72, unknown 2.9
1904 Male, age 53, unknown 2.5
2588 Male, age 74, left hemisphere 1.4
Substantia nigra
nTPM: 34.7
1916 Female, age 42, unknown 65.4
1889 Female, age 72, unknown 60.0
1941 Male, age 53, unknown 43.8
1851 Male, age 51, unknown 38.7
2665 Male, age 74, both hemispheres 37.5
2409 Female, age 72, unknown 28.8
2241 Male, age 72, unknown 25.8
2583 Male, age 75, right hemisphere 22.6
2590 Female, age 75, unknown 13.7
2699 Male, age 18, unknown 10.4
Superior colliculus
nTPM: 23.9
2087 Female, age 72, unknown 57.7
2668 Female, age 75, unknown 38.9
1895 Male, age 76, right hemisphere 34.7
1796 Male, age 53, unknown 26.8
2261 Male, age 18, unknown 22.7
1839 Male, age 51, unknown 18.1
2587 Male, age 74, left hemisphere 14.3
1995 Male, age 72, unknown 11.2
1913 Female, age 42, unknown 10.2
2664 Male, age 75, both hemispheres 4.0
Ventral tegmental area
nTPM: 18.4
2410 Female, age 72, unknown 38.1
2218 Male, age 76, both hemispheres 28.4
1915 Female, age 42, unknown 23.0
2223 Female, age 72, unknown 14.5
1942 Male, age 51, unknown 6.2
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.8
Samples: 139

Max nTPM: 288.7
Min nTPM: 18.6
Std nTPM: 51.9
Median nTPM: 50.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 288.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 268.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 266.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 255.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 199.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 158.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 152.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 152.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 151.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 148.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.4
FF:10158-103A5 76 years, female 62.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.4
Pig sample Sample description nTPM
Midbrain
nTPM: 112.4
Samples: 4

Max nTPM: 178.7
Min nTPM: 67.0
Sample A Female 67.0
Sample B Female 67.6
Sample C Male 178.7
Sample D Male 136.1
Periaqueductal gray
nTPM: 71.9
Samples: 3

Max nTPM: 86.0
Min nTPM: 61.9
Sample B Female 67.8
Sample C Male 86.0
Sample D Male 61.9
Substantia nigra
nTPM: 84.0
Samples: 4

Max nTPM: 106.0
Min nTPM: 50.3
Sample A Female 106.0
Sample B Female 77.1
Sample C Male 102.4
Sample D Male 50.3
Superior colliculi
nTPM: 129.4
Samples: 4

Max nTPM: 175.3
Min nTPM: 101.1
Sample A Female 125.5
Sample B Female 101.1
Sample C Male 175.3
Sample D Male 115.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 501.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 501.6
Samples: 4

Max nTPM: 534.5
Min nTPM: 467.0
Sample A Male 467.0
Sample B Male 508.6
Sample C Female 534.5
Sample D Female 496.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
74581026 Antisense, RP_060215_02_D07, Mouse strain C57BL/6J (56 days, male) 12.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.