HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA:17.1 nTPM
GTEx:16.5 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:24.0 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Hippocampus
nTPM: 14.6
1898 Male, age 80, left hemisphere 16.9
1855 Male, age 76, left hemisphere 16.3
2529 Female, age 94, left hemisphere 14.7
1911 Female, age 85, right hemisphere 14.0
2148 Female, age 91, left hemisphere 13.3
2621 Female, age 67, right hemisphere 12.5
Dentate gyrus
nTPM: 14.1
2010 Male, age 76, both hemispheres 16.4
2528 Male, age 74, both hemispheres 14.8
2246 Female, age 85, both hemispheres 14.1
2530 Female, age 94, left hemisphere 14.1
1927 Female, age 91, both hemispheres 13.7
2531 Female, age 67, both hemispheres 11.4
Entorhinal gyrus
nTPM: 13.9
2117 Female, age 91, right hemisphere 15.9
1938 Female, age 85, left hemisphere 15.2
1787 Male, age 76, left hemisphere 14.0
2764 Male, age 80, right hemisphere 13.7
2686 Male, age 75, right hemisphere 13.4
2613 Female, age 94, left hemisphere 11.4
Hippocampus, CA1
nTPM: 17.1
2749 Male, age 80, left hemisphere 22.6
2045 Male, age 76, both hemispheres 19.1
1873 Female, age 85, both hemispheres 16.7
2527 Male, age 74, both hemispheres 13.9
2082 Female, age 91, right hemisphere 13.0
Hippocampus, CA2
nTPM: 14.2
1892 Male, age 76, both hemispheres 15.5
1963 Male, age 80, left hemisphere 15.5
2249 Male, age 74, both hemispheres 15.0
2113 Female, age 91, right hemisphere 13.7
1940 Female, age 85, left hemisphere 13.6
2437 Female, age 94, left hemisphere 11.7
Hippocampus, CA3
nTPM: 15.4
2137 Male, age 80, left hemisphere 22.9
1867 Male, age 76, both hemispheres 19.2
1891 Female, age 85, both hemispheres 14.5
2620 Female, age 94, left hemisphere 14.0
2436 Male, age 74, both hemispheres 11.5
2861 Female, age 67, both hemispheres 10.5
Parahippocampal cortex
nTPM: 14.0
1850 Male, age 80, both hemispheres 17.8
2018 Male, age 76, both hemispheres 17.1
2693 Female, age 94, both hemispheres 15.3
1933 Female, age 85, both hemispheres 14.1
2250 Female, age 67, right hemisphere 14.1
2245 Female, age 91, both hemispheres 13.7
2692 Male, age 74, both hemispheres 13.0
2532 Female, age 72, left hemisphere 12.9
1990 Female, age 91, right hemisphere 12.2
2622 Female, age 67, right hemisphere 10.2
Perirhinal gyrus
nTPM: 16.3
1841 Female, age 85, right hemisphere 17.6
1794 Male, age 80, right hemisphere 17.2
2521 Female, age 94, right hemisphere 16.1
2848 Male, age 76, right hemisphere 15.5
1847 Female, age 91, left hemisphere 15.2
Subiculum
nTPM: 14.4
1901 Male, age 80, both hemispheres 17.0
2042 Male, age 76, both hemispheres 16.8
2729 Female, age 91, right hemisphere 15.1
1977 Female, age 85, both hemispheres 13.9
2619 Male, age 74, both hemispheres 12.1
2438 Female, age 94, left hemisphere 11.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.5
Samples: 197

Max nTPM: 26.6
Min nTPM: 9.1
Std nTPM: 3.0
Median nTPM: 16.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 26.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 26.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 25.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 25.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 25.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 25.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 23.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 22.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 22.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 21.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.9
FF:10169-103B7 60 years, female 95.2
FF:10153-102I9 76 years, female 62.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.2
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.8
Sample A Female 26.6
Sample B Female 21.6
Sample C Male 24.6
Sample D Male 19.8
Entorhinal cortex
nTPM: 19.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 18.5
Sample A Female 18.9
Sample B Female 21.1
Sample C Male 20.7
Sample D Male 18.5
Subiculum
nTPM: 20.1
Samples: 4

Max nTPM: 23.3
Min nTPM: 18.5
Sample A Female 23.3
Sample B Female 18.5
Sample C Male 18.9
Sample D Male 19.6
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 21.9
Min nTPM: 18.0
Sample A Female 21.9
Sample B Female 19.1
Sample C Male 18.0
Sample D Male 19.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.0
Samples: 4

Max nTPM: 28.5
Min nTPM: 20.3
Sample A Male 22.8
Sample B Male 24.3
Sample C Female 20.3
Sample D Female 28.5
Hippocampal formation
nTPM: 23.5
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.0
Sample A Male 22.4
Sample B Male 27.3
Sample C Female 25.4
Sample D Female 19.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
69873391 Antisense, RP_050512_01_B09, Mouse strain C57BL/6J (56 days, male) 7.3
77799057 Antisense, RP_070212_03_E03, Mouse strain C57BL/6J (56 days, male) 0.5
70813155 Antisense, RP_050712_03_C11, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.