BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:14.9 nTPM
FANTOM5:21.3 Scaled Tags Per Million
Pig:43.3 nTPM
Mouse:16.6 nTPM
Allen mouse:9.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.9
2290 Female, age 72, unknown 5.1
2289 Male, age 61, right hemisphere 4.3
2288 Male, age 75, left hemisphere 4.1
1854 Male, age 80, left hemisphere 4.0
2481 Female, age 94, left hemisphere 3.9
2846 Female, age 79, unknown 3.6
1781 Male, age 74, unknown 3.5
1857 Female, age 85, left hemisphere 2.9
Claustrum
nTPM: 2.6
2568 Male, age 61, both hemispheres 3.3
2198 Male, age 80, both hemispheres 2.8
1956 Male, age 74, unknown 2.7
2196 Female, age 79, unknown 2.7
2392 Female, age 94, both hemispheres 2.6
2491 Male, age 75, both hemispheres 2.5
2645 Female, age 72, unknown 2.4
2284 Female, age 91, both hemispheres 2.0
2292 Female, age 85, both hemispheres 2.0
Globus pallidus, externus
nTPM: 2.9
1996 Male, age 80, right hemisphere 4.4
2772 Female, age 79, unknown 3.8
2646 Male, age 61, right hemisphere 2.4
2395 Male, age 75, both hemispheres 2.1
2567 Female, age 72, unknown 2.0
Globus pallidus, internus
nTPM: 2.8
2483 Female, age 94, right hemisphere 4.4
2778 Female, age 91, both hemispheres 3.5
1818 Male, age 74, unknown 3.3
2287 Male, age 75, right hemisphere 3.0
2566 Female, age 72, unknown 2.6
2111 Female, age 85, right hemisphere 1.6
2037 Male, age 80, right hemisphere 1.3
Nucleus accumbens
nTPM: 2.9
2286 Male, age 75, left hemisphere 4.1
1783 Male, age 74, unknown 4.0
1806 Female, age 85, left hemisphere 3.9
1856 Female, age 91, right hemisphere 3.3
2698 Female, age 72, unknown 3.0
2732 Male, age 80, right hemisphere 2.1
2824 Male, age 61, right hemisphere 1.8
2391 Female, age 94, left hemisphere 1.0
Nucleus basalis of Meynert
nTPM: 2.7
2393 Male, age 80, right hemisphere 3.5
2821 Male, age 75, both hemispheres 2.8
2484 Female, age 94, left hemisphere 2.3
2569 Male, age 61, both hemispheres 2.2
Nucleus of the diagonal band
nTPM: 2.8
2029 Male, age 61, right hemisphere 4.2
2775 Male, age 80, right hemisphere 4.2
2195 Female, age 85, both hemispheres 2.8
1979 Male, age 74, unknown 1.7
1812 Female, age 91, both hemispheres 1.4
Olfactory tubercle
nTPM: 3.2
1998 Female, age 91, both hemispheres 4.1
2487 Female, age 94, left hemisphere 3.6
2856 Male, age 75, right hemisphere 2.8
1846 Male, age 80, right hemisphere 2.1
Putamen
nTPM: 3.8
2466 Female, age 79, unknown 4.4
1829 Male, age 74, unknown 4.3
2647 Male, age 75, left hemisphere 4.0
1937 Female, age 91, right hemisphere 3.6
2489 Female, age 72, unknown 3.6
2482 Female, age 94, left hemisphere 3.4
1838 Male, age 80, right hemisphere 3.0
Septal nuclei
nTPM: 2.4
2059 Female, age 85, both hemispheres 3.1
1960 Male, age 74, unknown 3.0
2009 Female, age 91, both hemispheres 3.0
2031 Female, age 72, unknown 2.9
2629 Female, age 94, right hemisphere 2.1
2394 Male, age 61, left hemisphere 1.5
2199 Male, age 80, right hemisphere 1.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.9
Samples: 246

Max nTPM: 41.8
Min nTPM: 2.5
Std nTPM: 6.1
Median nTPM: 13.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 40.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 32.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 31.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 30.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 29.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 29.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 29.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 28.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 28.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 30.7
Min nTPM: 3.1
Std nTPM: 5.2
Median nTPM: 12.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 30.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 30.4
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 30.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 30.0
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 29.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 27.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 27.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 26.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 24.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 24.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.5
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Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 205

Max nTPM: 30.1
Min nTPM: 2.7
Std nTPM: 5.3
Median nTPM: 13.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 30.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 29.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 29.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 29.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 27.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 26.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 26.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 26.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 25.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 25.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 24.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.6
FF:10164-103B2 76 years, female 18.6
Globus pallidus
Scaled Tags Per Million: 15.6
FF:10161-103A8 76 years, female 17.1
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 15.7
FF:10037-101F1 23-56 years, mixed 15.7
Putamen
Scaled Tags Per Million: 21.3
FF:10176-103C5 60 years, female 21.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.3
Pig sample Sample description nTPM
Caudate
nTPM: 28.9
Samples: 4

Max nTPM: 34.6
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 29.0
Sample C Male 34.6
Sample D Male 29.2
Putamen
nTPM: 43.3
Samples: 4

Max nTPM: 56.8
Min nTPM: 36.2
Sample A Female 36.2
Sample B Female 37.1
Sample C Male 56.8
Sample D Male 43.0
Septum
nTPM: 24.7
Samples: 4

Max nTPM: 26.8
Min nTPM: 20.7
Sample A Female 26.8
Sample B Female 26.0
Sample C Male 25.1
Sample D Male 20.7
Ventral pallidum
nTPM: 28.5
Samples: 4

Max nTPM: 31.1
Min nTPM: 25.5
Sample A Female 25.5
Sample B Female 31.1
Sample C Male 29.8
Sample D Male 27.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.2
Sample A Male 19.2
Sample B Male 15.3
Sample C Female 14.2
Sample D Female 17.6
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 15.3
Sample C Female 16.4
Sample D Female 15.3
Ventral forebrain
nTPM: 13.4
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.4
Sample A Male 14.4
Sample B Male 12.3
Sample C Female 15.6
Sample D Female 11.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.8
72711 Antisense, RP_040407_01_G12, Mouse strain C57BL/6J (56 days, male) 15.3
1444 Antisense, RP_Baylor_103116, Mouse strain C57BL/6J (56 days, male) 0.3
1445 Antisense, RP_Baylor_103116, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 9.1
72711 Antisense, RP_040407_01_G12, Mouse strain C57BL/6J (56 days, male) 17.8
1444 Antisense, RP_Baylor_103116, Mouse strain C57BL/6J (56 days, male) 0.3
1445 Antisense, RP_Baylor_103116, Mouse strain C57BL/6J (56 days, male) 0.0

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