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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
134.738
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:67.0 nTPM
HPA:67.0 nTPM
GTEx:91.2 nTPM
FANTOM5:320.1 Scaled Tags Per Million
Pig:145.2 nTPM
Mouse:147.0 nTPM
Allen mouse:19.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB079005
Amygdala mean intensity 134.738
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 45.768
Basal medial amygdaloid nucleus 127.876
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 114.166
Cortical amygdala 125.847
Central amygdala 114.275
Medial amygdaloid nucleus 134.385

AMYGDALA - HPA Brain RNA-seq
Max nTPM 67.0
Sample id Sample description nTPM
Amygdala
nTPM: 10.5
2517 Female, age 94, left hemisphere 34.2
1987 Female, age 91, left hemisphere 18.4
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 51.9
2685 Female, age 94, left hemisphere 99.5
2243 Female, age 91, right hemisphere 98.1
2110 Male, age 80, left hemisphere 78.6
1955 Male, age 76, both hemispheres 16.5
2827 Female, age 67, right hemisphere 12.2
2609 Male, age 75, right hemisphere 6.5
Central amygdala
nTPM: 22.5
2239 Male, age 80, left hemisphere 53.2
2826 Female, age 94, left hemisphere 51.8
2701 Female, age 91, right hemisphere 7.3
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 52.1
2829 Male, age 80, left hemisphere 108.4
2242 Female, age 91, right hemisphere 92.4
2429 Female, age 94, left hemisphere 62.8
2535 Female, age 67, right hemisphere 37.6
2240 Male, age 76, both hemispheres 11.2
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 27.3
2534 Female, age 94, left hemisphere 97.1
2256 Male, age 80, left hemisphere 49.2
2255 Female, age 91, right hemisphere 15.4
1883 Male, age 76, both hemispheres 2.4
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 67.0
1974 Female, age 91, both hemispheres 108.1
2486 Female, age 94, both hemispheres 93.0
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 91.2
Samples: 152

Max nTPM: 269.6
Min nTPM: 1.3
Std nTPM: 61.5
Median nTPM: 76.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 269.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 261.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 261.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 258.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 256.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 218.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 208.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 202.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 200.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 200.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 197.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 197.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 191.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 189.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 173.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 170.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 165.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 164.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 163.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 161.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 159.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 152.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 151.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 147.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 144.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 138.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 138.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 138.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 135.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 132.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 132.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 132.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 130.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 130.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 125.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 123.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 119.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 119.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 114.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 113.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 107.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 103.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 102.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 102.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 98.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 93.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 90.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 90.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 87.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 85.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 80.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 79.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 78.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 77.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 76.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 75.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 73.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 71.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 66.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 64.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 62.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 60.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 60.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 56.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 55.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 54.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 51.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 48.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 47.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 45.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 42.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 42.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 38.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 38.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 38.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 36.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 36.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 34.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 34.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 33.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 32.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 32.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 32.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 29.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 28.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 28.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 27.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 27.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 26.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 26.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 25.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 23.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 23.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 17.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 16.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 15.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 11.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 320.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 320.1
FF:10151-102I7 76 years, female 320.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.2
Pig sample Sample description nTPM
Amygdala
nTPM: 145.2
Samples: 4

Max nTPM: 223.4
Min nTPM: 84.2
Sample A Female 223.4
Sample B Female 84.2
Sample C Male 131.6
Sample D Male 141.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.0
Samples: 4

Max nTPM: 179.3
Min nTPM: 118.4
Sample A Male 179.3
Sample B Male 149.9
Sample C Female 118.4
Sample D Female 140.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.1
71020896 Antisense, RP_050512_03_H05, Mouse strain C57BL/6J (56 days, male) 21.5
73929870 Antisense, RP_051214_03_H04, Mouse strain C57BL/6J (56 days, male) 16.8

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