BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:2.5 nTPM
HPA:2.5 nTPM
GTEx:2.8 nTPM
FANTOM5:4.2 Scaled Tags Per Million
Pig:4.3 nTPM
Mouse:10.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006694
Glial cells High
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
1857 Female, age 85, left hemisphere 2.9
2846 Female, age 79, unknown 2.8
1781 Male, age 74, unknown 2.6
1854 Male, age 80, left hemisphere 2.5
2288 Male, age 75, left hemisphere 2.5
2289 Male, age 61, right hemisphere 2.3
2290 Female, age 72, unknown 2.1
2481 Female, age 94, left hemisphere 2.0
Claustrum
nTPM: 2.2
2198 Male, age 80, both hemispheres 2.6
2568 Male, age 61, both hemispheres 2.4
1956 Male, age 74, unknown 2.3
2196 Female, age 79, unknown 2.2
2392 Female, age 94, both hemispheres 2.1
2491 Male, age 75, both hemispheres 2.1
2645 Female, age 72, unknown 2.1
2292 Female, age 85, both hemispheres 2.0
2284 Female, age 91, both hemispheres 1.9
Globus pallidus, externus
nTPM: 2.3
1996 Male, age 80, right hemisphere 2.6
2772 Female, age 79, unknown 2.3
2395 Male, age 75, both hemispheres 2.2
2567 Female, age 72, unknown 2.1
2646 Male, age 61, right hemisphere 2.1
Globus pallidus, internus
nTPM: 2.4
2037 Male, age 80, right hemisphere 2.7
2287 Male, age 75, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.4
1818 Male, age 74, unknown 2.3
2111 Female, age 85, right hemisphere 2.3
2483 Female, age 94, right hemisphere 2.3
2566 Female, age 72, unknown 2.3
Nucleus accumbens
nTPM: 2.5
1806 Female, age 85, left hemisphere 3.0
1783 Male, age 74, unknown 2.7
2286 Male, age 75, left hemisphere 2.6
2698 Female, age 72, unknown 2.6
2824 Male, age 61, right hemisphere 2.6
1856 Female, age 91, right hemisphere 2.4
2732 Male, age 80, right hemisphere 2.3
2391 Female, age 94, left hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 2.3
2821 Male, age 75, both hemispheres 2.8
2569 Male, age 61, both hemispheres 2.3
2393 Male, age 80, right hemisphere 2.2
2484 Female, age 94, left hemisphere 2.1
Nucleus of the diagonal band
nTPM: 2.2
1812 Female, age 91, both hemispheres 2.4
1979 Male, age 74, unknown 2.3
2029 Male, age 61, right hemisphere 2.3
2775 Male, age 80, right hemisphere 2.3
2195 Female, age 85, both hemispheres 1.9
Olfactory tubercle
nTPM: 2.1
2487 Female, age 94, left hemisphere 2.2
1846 Male, age 80, right hemisphere 2.1
1998 Female, age 91, both hemispheres 2.1
2856 Male, age 75, right hemisphere 2.0
Putamen
nTPM: 2.2
1829 Male, age 74, unknown 2.6
2466 Female, age 79, unknown 2.3
1838 Male, age 80, right hemisphere 2.2
2482 Female, age 94, left hemisphere 2.2
2647 Male, age 75, left hemisphere 2.2
2489 Female, age 72, unknown 2.0
1937 Female, age 91, right hemisphere 1.9
Septal nuclei
nTPM: 2.2
2009 Female, age 91, both hemispheres 2.4
2394 Male, age 61, left hemisphere 2.4
2629 Female, age 94, right hemisphere 2.3
1960 Male, age 74, unknown 2.2
2031 Female, age 72, unknown 2.1
2059 Female, age 85, both hemispheres 2.1
2199 Male, age 80, right hemisphere 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.6
Samples: 246

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 2.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 5.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 5.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 4.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 4.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 4.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 4.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 3.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 3.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 4.4
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 2.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 4.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 4.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 4.2
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 4.0
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 3.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 3.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 3.6
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 3.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 3.6
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 3.5
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 3.5
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 4.8
Min nTPM: 0.4
Std nTPM: 0.6
Median nTPM: 2.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 4.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 4.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 4.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 4.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 3.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 3.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 3.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 3.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 3.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.2
FF:10164-103B2 76 years, female 4.2
Globus pallidus
Scaled Tags Per Million: 3.9
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 3.3
FF:10037-101F1 23-56 years, mixed 3.3
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.3
Pig sample Sample description nTPM
Caudate
nTPM: 4.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 4.3
Sample C Male 4.9
Sample D Male 4.9
Putamen
nTPM: 4.2
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.5
Sample C Male 4.2
Sample D Male 4.5
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.8
Sample A Female 3.6
Sample B Female 3.9
Sample C Male 2.8
Sample D Male 3.3
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.2
Sample C Male 3.8
Sample D Male 4.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 9.9
Sample C Female 11.7
Sample D Female 10.4
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 11.0
Min nTPM: 10.3
Sample A Male 10.9
Sample B Male 10.4
Sample C Female 10.3
Sample D Female 11.0
Ventral forebrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.2
Min nTPM: 10.0
Sample A Male 11.2
Sample B Male 10.0
Sample C Female 10.3
Sample D Female 11.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71668994 Antisense, RP_050607_02_B04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71668994 Antisense, RP_050607_02_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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