MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:6.3 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:57.0 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2219 Male, age 76, both hemispheres 24.6
2586 Male, age 75, left hemisphere 12.8
1833 Male, age 53, unknown 12.7
1827 Male, age 72, unknown 12.6
1830 Male, age 51, unknown 10.8
2411 Female, age 72, unknown 10.0
2828 Female, age 72, unknown 10.0
1870 Female, age 42, unknown 9.2
2019 Male, age 18, unknown 7.6
2666 Male, age 74, left hemisphere 6.3
Dorsal raphe nucleus
nTPM: 12.5
1828 Male, age 53, unknown 17.6
2047 Male, age 72, unknown 13.3
2016 Female, age 72, unknown 11.5
2298 Female, age 72, unknown 11.1
2750 Male, age 76, both hemispheres 9.2
Inferior colliculus
nTPM: 15.7
2097 Female, age 72, unknown 17.3
1890 Male, age 53, unknown 17.2
2849 Male, age 72, unknown 16.7
1848 Female, age 42, unknown 11.8
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Pedunculopontine tegmental nucleus
nTPM: 10.5
1921 Female, age 85, both hemispheres 15.0
2334 Male, age 80, both hemispheres 8.9
2338 Male, age 61, both hemispheres 7.5
Periaquaductal grey, anterior
nTPM: 9.2
1795 Male, age 51, unknown 11.3
2502 Female, age 75, unknown 10.7
1947 Male, age 18, unknown 5.5
Periaquaductal grey, dorsal
nTPM: 10.9
2850 Male, age 76, both hemispheres 14.9
1840 Male, age 53, unknown 13.7
2464 Female, age 72, unknown 8.7
1831 Male, age 72, unknown 6.3
Periaquaductal grey, lateral
nTPM: 12.4
2272 Male, age 74, both hemispheres 20.0
2053 Male, age 18, unknown 9.6
2140 Male, age 76, both hemispheres 7.5
Pretectal area
nTPM: 11.0
2667 Female, age 75, unknown 17.3
2273 Male, age 74, both hemispheres 15.8
2407 Male, age 75, both hemispheres 13.3
2224 Female, age 72, unknown 12.5
2825 Male, age 18, unknown 12.4
1817 Female, age 42, unknown 9.8
2007 Male, age 72, unknown 9.6
1815 Male, age 53, unknown 8.7
1944 Female, age 72, unknown 7.9
1816 Male, age 51, unknown 6.7
2316 Male, age 76, right hemisphere 6.6
Red nucleus
nTPM: 8.1
1821 Female, age 72, unknown 13.4
2584 Male, age 75, left hemisphere 13.0
2227 Male, age 72, unknown 10.4
2725 Female, age 75, unknown 9.9
2769 Male, age 72, unknown 9.7
2785 Male, age 18, unknown 9.4
1954 Female, age 42, unknown 7.9
2823 Male, age 76, right hemisphere 5.5
1865 Male, age 51, unknown 4.9
2503 Female, age 72, unknown 4.6
1904 Male, age 53, unknown 4.5
2588 Male, age 74, left hemisphere 4.1
Substantia nigra
nTPM: 21.2
2699 Male, age 18, unknown 36.7
1916 Female, age 42, unknown 32.6
1941 Male, age 53, unknown 26.6
1851 Male, age 51, unknown 25.3
2241 Male, age 72, unknown 25.0
2665 Male, age 74, both hemispheres 22.4
2409 Female, age 72, unknown 14.0
1889 Female, age 72, unknown 13.1
2583 Male, age 75, right hemisphere 10.3
2590 Female, age 75, unknown 6.1
Superior colliculus
nTPM: 8.7
1796 Male, age 53, unknown 14.1
2668 Female, age 75, unknown 11.3
1839 Male, age 51, unknown 10.5
2587 Male, age 74, left hemisphere 10.5
1895 Male, age 76, right hemisphere 9.1
2664 Male, age 75, both hemispheres 7.8
1913 Female, age 42, unknown 6.9
2261 Male, age 18, unknown 6.3
2087 Female, age 72, unknown 6.2
1995 Male, age 72, unknown 4.3
Ventral tegmental area
nTPM: 21.3
2218 Male, age 76, both hemispheres 33.2
1915 Female, age 42, unknown 25.9
2223 Female, age 72, unknown 23.1
1942 Male, age 51, unknown 20.7
2410 Female, age 72, unknown 19.3
2021 Male, age 53, unknown 5.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.3
Samples: 139

Max nTPM: 23.3
Min nTPM: 0.0
Std nTPM: 5.1
Median nTPM: 5.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 23.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 19.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 18.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 17.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 15.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 15.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.4
FF:10158-103A5 76 years, female 26.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 45.8
Min nTPM: 16.2
Sample A Female 24.8
Sample B Female 24.1
Sample C Male 16.2
Sample D Male 45.8
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 34.9
Min nTPM: 22.2
Sample B Female 22.2
Sample C Male 34.9
Sample D Male 24.4
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 47.6
Min nTPM: 19.5
Sample A Female 39.7
Sample B Female 28.4
Sample C Male 47.6
Sample D Male 19.5
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 16.4
Sample A Female 44.4
Sample B Female 20.6
Sample C Male 16.4
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 53.6
Sample A Male 57.0
Sample B Male 53.6
Sample C Female 57.4
Sample D Female 59.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
74635614 Antisense, RP_060215_04_B01, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.