BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA:11.6 nTPM
GTEx:16.7 nTPM
FANTOM5:95.7 Scaled Tags Per Million
Pig:30.5 nTPM
Mouse:157.1 nTPM
Allen mouse:18.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.8
2290 Female, age 72, unknown 17.0
2846 Female, age 79, unknown 14.5
2289 Male, age 61, right hemisphere 13.9
1854 Male, age 80, left hemisphere 12.8
1857 Female, age 85, left hemisphere 12.1
2288 Male, age 75, left hemisphere 8.5
1781 Male, age 74, unknown 7.4
2481 Female, age 94, left hemisphere 0.1
Claustrum
nTPM: 5.0
2392 Female, age 94, both hemispheres 10.2
2284 Female, age 91, both hemispheres 7.5
2568 Male, age 61, both hemispheres 7.4
2491 Male, age 75, both hemispheres 6.0
2198 Male, age 80, both hemispheres 5.4
2645 Female, age 72, unknown 4.5
2196 Female, age 79, unknown 2.1
1956 Male, age 74, unknown 1.6
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 9.2
2824 Male, age 61, right hemisphere 20.3
1856 Female, age 91, right hemisphere 17.2
1783 Male, age 74, unknown 12.7
1806 Female, age 85, left hemisphere 9.5
2698 Female, age 72, unknown 7.8
2286 Male, age 75, left hemisphere 5.9
2732 Male, age 80, right hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 6.1
2393 Male, age 80, right hemisphere 11.6
2484 Female, age 94, left hemisphere 10.2
2821 Male, age 75, both hemispheres 2.5
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 4.9
2029 Male, age 61, right hemisphere 8.8
2775 Male, age 80, right hemisphere 7.3
2195 Female, age 85, both hemispheres 4.6
1812 Female, age 91, both hemispheres 3.6
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 7.8
1998 Female, age 91, both hemispheres 11.4
2487 Female, age 94, left hemisphere 9.4
2856 Male, age 75, right hemisphere 8.1
1846 Male, age 80, right hemisphere 2.2
Putamen
nTPM: 11.6
1838 Male, age 80, right hemisphere 18.8
2466 Female, age 79, unknown 17.4
1829 Male, age 74, unknown 13.8
1937 Female, age 91, right hemisphere 12.4
2489 Female, age 72, unknown 10.9
2647 Male, age 75, left hemisphere 4.0
2482 Female, age 94, left hemisphere 3.9
Septal nuclei
nTPM: 3.6
1960 Male, age 74, unknown 8.1
2629 Female, age 94, right hemisphere 6.3
2031 Female, age 72, unknown 5.2
2059 Female, age 85, both hemispheres 3.0
2009 Female, age 91, both hemispheres 2.5
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.7
Samples: 246

Max nTPM: 53.6
Min nTPM: 0.0
Std nTPM: 10.2
Median nTPM: 12.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 53.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 43.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 42.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 39.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 39.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 36.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 35.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 33.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 33.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 43.0
Min nTPM: 0.0
Std nTPM: 10.4
Median nTPM: 17.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 43.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 41.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 39.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 38.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 38.7
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 37.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 37.3
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 36.2
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 35.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 34.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 33.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.5
Samples: 205

Max nTPM: 49.7
Min nTPM: 0.0
Std nTPM: 10.0
Median nTPM: 10.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 49.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 40.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 38.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 37.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 35.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 34.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 33.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 32.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 31.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 30.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 29.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.7
FF:10164-103B2 76 years, female 95.7
Globus pallidus
Scaled Tags Per Million: 32.5
FF:10175-103C4 60 years, female 52.8
FF:10161-103A8 76 years, female 12.2
Nucleus accumbens
Scaled Tags Per Million: 89.2
FF:10037-101F1 23-56 years, mixed 89.2
Putamen
Scaled Tags Per Million: 87.9
FF:10176-103C5 60 years, female 87.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.5
Pig sample Sample description nTPM
Caudate
nTPM: 28.9
Samples: 4

Max nTPM: 32.7
Min nTPM: 21.7
Sample A Female 21.7
Sample B Female 31.2
Sample C Male 29.9
Sample D Male 32.7
Putamen
nTPM: 30.5
Samples: 4

Max nTPM: 43.7
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 36.7
Sample C Male 43.7
Sample D Male 31.3
Septum
nTPM: 15.8
Samples: 4

Max nTPM: 28.1
Min nTPM: 1.6
Sample A Female 28.1
Sample B Female 28.1
Sample C Male 5.4
Sample D Male 1.6
Ventral pallidum
nTPM: 24.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 13.8
Sample A Female 38.1
Sample B Female 23.1
Sample C Male 13.8
Sample D Male 21.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 157.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 157.1
Samples: 4

Max nTPM: 175.4
Min nTPM: 142.3
Sample A Male 175.4
Sample B Male 165.7
Sample C Female 142.3
Sample D Female 144.9
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 34.6
Min nTPM: 12.2
Sample A Male 34.6
Sample B Male 12.2
Sample C Female 18.9
Sample D Female 18.5
Ventral forebrain
nTPM: 94.7
Samples: 4

Max nTPM: 95.6
Min nTPM: 93.4
Sample A Male 95.6
Sample B Male 94.4
Sample C Female 95.5
Sample D Female 93.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 18.8
79591395 Antisense, RP_071204_04_A05, Mouse strain C57BL/6J (56 days, male) 19.8
69236927 Antisense, RP_050331_01_E02, Mouse strain C57BL/6J (56 days, male) 17.7
Pallidum
Expression energy: 9.5
69236927 Antisense, RP_050331_01_E02, Mouse strain C57BL/6J (56 days, male) 11.5
79591395 Antisense, RP_071204_04_A05, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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