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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:92.8 nTPM
HPA:92.8 nTPM
GTEx:80.0 nTPM
FANTOM5:149.0 Scaled Tags Per Million
Pig:174.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 92.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 87.2
1981 Female, age 72, midline 95.1
2194 Female, age 79, both hemispheres 93.2
2565 Male, age 75, midline 86.1
2816 Male, age 47, midline 82.0
2048 Male, age 55, midline 79.6
Cervical spinal cord, dorsal horn
nTPM: 86.5
2721 Male, age 90, both hemispheres 97.6
2173 Female, age 72, unknown 90.9
2069 Male, age 47, both hemispheres 88.2
2297 Male, age 75, both hemispheres 85.6
1877 Male, age 55, unknown 80.9
2296 Male, age 66, both hemispheres 75.7
Cervical spinal cord, ventral horn
nTPM: 92.8
2098 Female, age 72, unknown 120.6
2820 Female, age 79, both hemispheres 95.4
2068 Male, age 55, unknown 93.2
2295 Male, age 66, both hemispheres 84.1
2480 Male, age 75, both hemispheres 83.2
2809 Male, age 90, both hemispheres 80.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 80.0
Samples: 159

Max nTPM: 198.2
Min nTPM: 27.4
Std nTPM: 38.6
Median nTPM: 66.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 198.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 192.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 185.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 178.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 171.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 162.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 160.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 153.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 152.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 149.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 145.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 142.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 140.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 136.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 136.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 134.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 129.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 129.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 123.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 117.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 117.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 116.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 116.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 114.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 113.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 111.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 108.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 108.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 107.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 107.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 105.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 103.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 103.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 100.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 98.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 97.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 95.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 95.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 95.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 95.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 94.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 93.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 92.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 92.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 90.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 89.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 89.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 88.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 85.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 85.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 79.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 79.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 78.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 77.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 76.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 76.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 76.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 74.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 71.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 71.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 70.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 70.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 67.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 67.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 67.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 66.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 66.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 65.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 65.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 65.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 65.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 64.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 64.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 63.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 62.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 61.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 60.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 60.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 60.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 59.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 59.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 58.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 57.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 57.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 57.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 55.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 55.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 55.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 55.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 55.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 54.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 54.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 53.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 53.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 52.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 51.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 50.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 50.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 50.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 50.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 49.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 48.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 48.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 47.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 47.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 47.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 47.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 45.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 45.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 45.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 44.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 44.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 43.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 43.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 41.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 41.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 41.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 41.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 40.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 40.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 39.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 39.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 39.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 38.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 38.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 38.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 38.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 38.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 36.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 33.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 32.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 32.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 27.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 149.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 149.0
FF:10181-103D1 60 years, female 205.9
FF:10159-103A6 76 years, female 92.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 156.6
Samples: 4

Max nTPM: 213.4
Min nTPM: 128.3
Sample A Female 128.3
Sample B Female 142.5
Sample C Male 213.4
Sample D Male 142.1
Ventral spinal cord
nTPM: 174.0
Samples: 4

Max nTPM: 193.2
Min nTPM: 155.3
Sample A Female 155.3
Sample B Female 193.2
Sample C Male 183.6
Sample D Male 163.7

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