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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
13.093
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:17.5 nTPM
HPA:17.5 nTPM
GTEx:20.9 nTPM
FANTOM5:4.3 Scaled Tags Per Million
Pig:36.7 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA030918
Amygdala mean intensity 13.093
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 13.093
Basal medial amygdaloid nucleus 5.331
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 3.081
Cortical amygdala 7.515
Central amygdala 4.965
Medial amygdaloid nucleus 7.502

AMYGDALA - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Amygdala
nTPM: 17.5
2695 Female, age 67, right hemisphere 22.6
2814 Male, age 76, right hemisphere 18.2
2514 Male, age 75, right hemisphere 16.7
1987 Female, age 91, left hemisphere 15.5
2517 Female, age 94, left hemisphere 14.3
Basal amygdala
nTPM: 14.5
2827 Female, age 67, right hemisphere 16.6
1955 Male, age 76, both hemispheres 15.8
2110 Male, age 80, left hemisphere 14.8
2609 Male, age 75, right hemisphere 14.5
2243 Female, age 91, right hemisphere 13.0
2685 Female, age 94, left hemisphere 12.0
Central amygdala
nTPM: 16.7
2826 Female, age 94, left hemisphere 18.5
1905 Male, age 76, both hemispheres 18.3
2515 Male, age 75, right hemisphere 17.4
2701 Female, age 91, right hemisphere 16.4
2239 Male, age 80, left hemisphere 13.0
Corticomedial amygdala
nTPM: 13.8
2428 Male, age 75, right hemisphere 16.0
2240 Male, age 76, both hemispheres 15.6
2242 Female, age 91, right hemisphere 13.4
2535 Female, age 67, right hemisphere 13.3
2429 Female, age 94, left hemisphere 12.8
2829 Male, age 80, left hemisphere 11.6
Lateral amygdala
nTPM: 16.1
2830 Female, age 67, right hemisphere 18.4
2516 Male, age 75, right hemisphere 17.4
1883 Male, age 76, both hemispheres 17.0
2534 Female, age 94, left hemisphere 16.7
2255 Female, age 91, right hemisphere 13.8
2256 Male, age 80, left hemisphere 13.3
Stria terminalis, bed nucleus
nTPM: 14.8
1974 Female, age 91, both hemispheres 16.7
2201 Male, age 74, unknown 14.0
2486 Female, age 94, both hemispheres 13.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.9
Samples: 152

Max nTPM: 433.8
Min nTPM: 4.7
Std nTPM: 36.2
Median nTPM: 15.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 433.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 137.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 82.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 65.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 36.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 32.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 31.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 29.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 27.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 27.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 27.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 27.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 27.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 26.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 26.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 25.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 25.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 25.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 25.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 24.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 23.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 22.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 22.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 22.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 21.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 21.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 21.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 21.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 20.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 20.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 20.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 20.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 20.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 20.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 20.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 19.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 19.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 19.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 19.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 18.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 18.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 18.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 18.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 18.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 18.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 17.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 17.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 17.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 16.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 16.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 16.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 16.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 16.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 15.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 15.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 15.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 15.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 15.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 15.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 15.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 15.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 15.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 15.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 14.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 14.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 14.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 14.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 14.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 14.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 14.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 14.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 13.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 13.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 13.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 13.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 13.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 13.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 13.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 13.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 13.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 13.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 13.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 13.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 13.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 13.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 12.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 12.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 12.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 12.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 12.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 12.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 12.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 12.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 12.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 12.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 12.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 12.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 12.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 12.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 12.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 11.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 11.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 11.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 11.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 11.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 11.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 11.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 10.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 10.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 10.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 10.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 10.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 10.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 10.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 10.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 10.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 10.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 10.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 10.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 9.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 9.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 9.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 9.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 9.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 8.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 8.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 8.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 8.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 8.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 7.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 4.3
FF:10151-102I7 76 years, female 4.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.7
Pig sample Sample description nTPM
Amygdala
nTPM: 36.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 27.5
Sample A Female 54.4
Sample B Female 31.4
Sample C Male 27.5
Sample D Male 33.5

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