MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:136.3 nTPM
HPA:136.3 nTPM
GTEx:115.7 nTPM
FANTOM5:515.1 Scaled Tags Per Million
Pig:145.7 nTPM
Mouse:23.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.4
1870 Female, age 42, unknown 139.0
1830 Male, age 51, unknown 135.7
2411 Female, age 72, unknown 131.6
1833 Male, age 53, unknown 127.8
2019 Male, age 18, unknown 123.1
2828 Female, age 72, unknown 106.6
2666 Male, age 74, left hemisphere 98.1
2219 Male, age 76, both hemispheres 96.6
2586 Male, age 75, left hemisphere 94.8
1827 Male, age 72, unknown 90.6
Dorsal raphe nucleus
nTPM: 96.4
2750 Male, age 76, both hemispheres 140.8
1828 Male, age 53, unknown 99.0
2016 Female, age 72, unknown 97.8
2047 Male, age 72, unknown 76.5
2298 Female, age 72, unknown 67.9
Inferior colliculus
nTPM: 91.1
1890 Male, age 53, unknown 97.4
1848 Female, age 42, unknown 95.8
2849 Male, age 72, unknown 87.7
2097 Female, age 72, unknown 83.2
Median raphe nucleus
nTPM: 94.2
2220 Male, age 76, midline 94.2
Pedunculopontine tegmental nucleus
nTPM: 104.8
2338 Male, age 61, both hemispheres 110.3
2334 Male, age 80, both hemispheres 109.1
1921 Female, age 85, both hemispheres 95.1
Periaquaductal grey, anterior
nTPM: 81.5
2502 Female, age 75, unknown 87.4
1947 Male, age 18, unknown 82.2
1795 Male, age 51, unknown 74.9
Periaquaductal grey, dorsal
nTPM: 79.9
2464 Female, age 72, unknown 99.5
1831 Male, age 72, unknown 83.8
2850 Male, age 76, both hemispheres 70.2
1840 Male, age 53, unknown 66.1
Periaquaductal grey, lateral
nTPM: 81.4
2053 Male, age 18, unknown 90.2
2272 Male, age 74, both hemispheres 80.4
2140 Male, age 76, both hemispheres 73.5
Pretectal area
nTPM: 87.1
1815 Male, age 53, unknown 102.3
2316 Male, age 76, right hemisphere 101.4
2667 Female, age 75, unknown 100.7
2825 Male, age 18, unknown 90.3
2407 Male, age 75, both hemispheres 89.3
1817 Female, age 42, unknown 86.8
2224 Female, age 72, unknown 82.4
2007 Male, age 72, unknown 82.3
2273 Male, age 74, both hemispheres 79.9
1944 Female, age 72, unknown 74.2
1816 Male, age 51, unknown 68.7
Red nucleus
nTPM: 136.3
1865 Male, age 51, unknown 160.7
1904 Male, age 53, unknown 154.3
2769 Male, age 72, unknown 150.4
2227 Male, age 72, unknown 149.6
1821 Female, age 72, unknown 148.1
2823 Male, age 76, right hemisphere 143.4
2503 Female, age 72, unknown 140.7
1954 Female, age 42, unknown 137.2
2785 Male, age 18, unknown 128.8
2588 Male, age 74, left hemisphere 120.7
2584 Male, age 75, left hemisphere 105.5
2725 Female, age 75, unknown 95.4
Substantia nigra
nTPM: 97.5
2409 Female, age 72, unknown 113.7
2583 Male, age 75, right hemisphere 112.2
2699 Male, age 18, unknown 104.4
1851 Male, age 51, unknown 101.3
2590 Female, age 75, unknown 100.4
1889 Female, age 72, unknown 98.7
2241 Male, age 72, unknown 93.8
1941 Male, age 53, unknown 88.4
1916 Female, age 42, unknown 81.0
2665 Male, age 74, both hemispheres 80.9
Superior colliculus
nTPM: 101.4
1913 Female, age 42, unknown 150.8
1995 Male, age 72, unknown 128.6
1895 Male, age 76, right hemisphere 110.5
2668 Female, age 75, unknown 105.1
2587 Male, age 74, left hemisphere 103.4
1839 Male, age 51, unknown 99.1
1796 Male, age 53, unknown 82.9
2664 Male, age 75, both hemispheres 79.8
2087 Female, age 72, unknown 79.2
2261 Male, age 18, unknown 74.4
Ventral tegmental area
nTPM: 106.3
2223 Female, age 72, unknown 146.8
2410 Female, age 72, unknown 116.8
1942 Male, age 51, unknown 97.5
2218 Male, age 76, both hemispheres 95.3
2021 Male, age 53, unknown 94.1
1915 Female, age 42, unknown 87.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.7
Samples: 139

Max nTPM: 323.3
Min nTPM: 38.8
Std nTPM: 49.0
Median nTPM: 107.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 323.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 295.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 263.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 256.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 239.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 227.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 212.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 203.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 202.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 198.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 197.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 515.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 515.1
FF:10158-103A5 76 years, female 515.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 145.7
Pig sample Sample description nTPM
Midbrain
nTPM: 145.7
Samples: 4

Max nTPM: 350.5
Min nTPM: 61.8
Sample A Female 350.5
Sample B Female 102.9
Sample C Male 67.6
Sample D Male 61.8
Periaqueductal gray
nTPM: 69.5
Samples: 3

Max nTPM: 83.5
Min nTPM: 52.2
Sample B Female 83.5
Sample C Male 52.2
Sample D Male 72.7
Substantia nigra
nTPM: 109.8
Samples: 4

Max nTPM: 175.2
Min nTPM: 68.5
Sample A Female 106.6
Sample B Female 68.5
Sample C Male 88.9
Sample D Male 175.2
Superior colliculi
nTPM: 94.6
Samples: 4

Max nTPM: 110.6
Min nTPM: 68.4
Sample A Female 100.2
Sample B Female 68.4
Sample C Male 99.2
Sample D Male 110.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 22.3
Sample A Male 22.3
Sample B Male 22.6
Sample C Female 25.8
Sample D Female 24.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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