MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.2 nTPM
HPA:50.2 nTPM
GTEx:47.0 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:17.2 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2411 Female, age 72, unknown 57.0
1870 Female, age 42, unknown 49.5
1830 Male, age 51, unknown 46.0
1833 Male, age 53, unknown 40.8
2019 Male, age 18, unknown 37.8
2219 Male, age 76, both hemispheres 37.6
2828 Female, age 72, unknown 37.6
2586 Male, age 75, left hemisphere 36.7
2666 Male, age 74, left hemisphere 36.1
1827 Male, age 72, unknown 32.7
Dorsal raphe nucleus
nTPM: 35.6
2750 Male, age 76, both hemispheres 64.8
2047 Male, age 72, unknown 31.1
1828 Male, age 53, unknown 30.1
2298 Female, age 72, unknown 27.6
2016 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 23.4
1890 Male, age 53, unknown 29.9
1848 Female, age 42, unknown 22.9
2097 Female, age 72, unknown 22.4
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 46.4
2220 Male, age 76, midline 46.4
Pedunculopontine tegmental nucleus
nTPM: 42.6
2334 Male, age 80, both hemispheres 46.1
1921 Female, age 85, both hemispheres 41.1
2338 Male, age 61, both hemispheres 40.5
Periaquaductal grey, anterior
nTPM: 30.5
1947 Male, age 18, unknown 35.7
1795 Male, age 51, unknown 30.5
2502 Female, age 75, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 18.8
2464 Female, age 72, unknown 25.1
1831 Male, age 72, unknown 22.9
1840 Male, age 53, unknown 14.5
2850 Male, age 76, both hemispheres 12.9
Periaquaductal grey, lateral
nTPM: 21.9
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 25.6
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 26.7
2407 Male, age 75, both hemispheres 34.9
1815 Male, age 53, unknown 33.1
2825 Male, age 18, unknown 30.0
2007 Male, age 72, unknown 29.0
2273 Male, age 74, both hemispheres 28.3
2316 Male, age 76, right hemisphere 25.5
1817 Female, age 42, unknown 24.3
2667 Female, age 75, unknown 22.8
2224 Female, age 72, unknown 22.6
1944 Female, age 72, unknown 21.9
1816 Male, age 51, unknown 21.5
Red nucleus
nTPM: 50.2
2588 Male, age 74, left hemisphere 60.8
2584 Male, age 75, left hemisphere 60.7
1904 Male, age 53, unknown 56.1
1865 Male, age 51, unknown 55.6
2227 Male, age 72, unknown 51.2
2769 Male, age 72, unknown 51.1
2503 Female, age 72, unknown 48.7
1821 Female, age 72, unknown 48.1
2823 Male, age 76, right hemisphere 47.2
2725 Female, age 75, unknown 45.1
2785 Male, age 18, unknown 40.3
1954 Female, age 42, unknown 37.4
Substantia nigra
nTPM: 37.0
2583 Male, age 75, right hemisphere 51.7
1851 Male, age 51, unknown 43.7
1916 Female, age 42, unknown 42.8
2590 Female, age 75, unknown 35.7
1941 Male, age 53, unknown 35.5
2241 Male, age 72, unknown 34.8
1889 Female, age 72, unknown 32.9
2409 Female, age 72, unknown 32.4
2699 Male, age 18, unknown 31.0
2665 Male, age 74, both hemispheres 29.8
Superior colliculus
nTPM: 33.6
1913 Female, age 42, unknown 51.1
2668 Female, age 75, unknown 49.7
2587 Male, age 74, left hemisphere 41.1
1995 Male, age 72, unknown 38.5
1796 Male, age 53, unknown 31.5
2261 Male, age 18, unknown 28.6
1839 Male, age 51, unknown 27.9
1895 Male, age 76, right hemisphere 25.1
2087 Female, age 72, unknown 23.1
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 46.9
2223 Female, age 72, unknown 72.5
2218 Male, age 76, both hemispheres 48.9
2410 Female, age 72, unknown 48.5
1942 Male, age 51, unknown 41.8
2021 Male, age 53, unknown 35.5
1915 Female, age 42, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.0
Samples: 139

Max nTPM: 186.8
Min nTPM: 5.7
Std nTPM: 27.0
Median nTPM: 44.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 186.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 172.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 137.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 114.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 102.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 93.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 87.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 86.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 82.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.8
Pig sample Sample description nTPM
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 96.6
Min nTPM: 8.3
Sample A Female 96.6
Sample B Female 10.0
Sample C Male 28.2
Sample D Male 8.3
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 9.6
Min nTPM: 6.4
Sample B Female 6.4
Sample C Male 9.6
Sample D Male 7.7
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 10.0
Sample A Female 29.6
Sample B Female 10.0
Sample C Male 28.5
Sample D Male 20.2
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 15.1
Min nTPM: 4.8
Sample A Female 10.4
Sample B Female 4.8
Sample C Male 13.6
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.7
Sample A Male 16.7
Sample B Male 17.1
Sample C Female 17.4
Sample D Female 17.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71587595 Antisense, RP_050915_04_E10, Mouse strain C57BL/6J (56 days, male) 3.6
73635770 Antisense, RP_050915_04_E10, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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