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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:34.6 nTPM
FANTOM5:51.6 Scaled Tags Per Million
Pig:37.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 36.6
2565 Male, age 75, midline 44.3
1981 Female, age 72, midline 37.4
2194 Female, age 79, both hemispheres 35.4
2816 Male, age 47, midline 34.7
2048 Male, age 55, midline 31.3
Cervical spinal cord, dorsal horn
nTPM: 37.0
2173 Female, age 72, unknown 40.3
2296 Male, age 66, both hemispheres 40.1
2069 Male, age 47, both hemispheres 37.3
1877 Male, age 55, unknown 36.0
2297 Male, age 75, both hemispheres 36.0
2721 Male, age 90, both hemispheres 32.6
Cervical spinal cord, ventral horn
nTPM: 36.6
2480 Male, age 75, both hemispheres 40.7
2809 Male, age 90, both hemispheres 38.7
2068 Male, age 55, unknown 36.6
2295 Male, age 66, both hemispheres 36.6
2820 Female, age 79, both hemispheres 33.9
2098 Female, age 72, unknown 33.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 34.6
Samples: 159

Max nTPM: 52.9
Min nTPM: 22.9
Std nTPM: 5.3
Median nTPM: 34.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 52.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 52.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 46.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 45.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 44.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 42.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 42.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 42.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 41.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 41.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 41.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 41.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 41.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 41.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 41.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 40.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 40.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 40.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 40.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 40.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 40.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 40.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 40.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 40.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 40.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 40.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 39.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 39.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 39.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 39.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 38.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 38.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 38.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 38.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 38.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 38.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 38.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 38.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 38.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 38.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 38.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 38.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 38.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 38.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 37.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 37.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 37.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 37.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 37.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 37.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 36.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 36.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 36.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 36.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 36.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 36.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 36.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 36.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 36.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 36.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 35.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 35.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 35.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 35.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 35.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 35.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 35.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 34.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 34.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 34.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 34.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 34.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 34.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 34.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 34.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 34.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 34.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 34.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 34.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 34.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 33.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 33.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 33.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 33.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 33.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 33.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 33.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 33.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 33.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 32.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 32.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 32.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 32.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 32.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 32.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 32.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 32.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 32.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 32.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 32.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 31.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 31.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 31.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 31.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 31.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 31.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 31.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 31.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 31.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 30.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 30.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 30.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 30.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 30.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 29.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 29.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 29.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 29.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 29.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 29.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 29.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 29.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 29.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 28.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 28.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 28.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 28.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 28.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 27.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 27.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 27.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 27.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 27.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 26.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 26.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 26.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 26.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 26.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 25.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 25.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 25.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 25.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 23.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 23.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 22.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 51.6
FF:10181-103D1 60 years, female 61.6
FF:10159-103A6 76 years, female 41.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35.6
Samples: 4

Max nTPM: 37.6
Min nTPM: 34.1
Sample A Female 37.6
Sample B Female 34.1
Sample C Male 36.5
Sample D Male 34.2
Ventral spinal cord
nTPM: 37.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 36.0
Sample A Female 39.6
Sample B Female 37.5
Sample C Male 36.0
Sample D Male 36.5

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