BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.5 nTPM
HPA:6.5 nTPM
GTEx:4.1 nTPM
FANTOM5:14.0 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:5.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018157
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
2481 Female, age 94, left hemisphere 5.2
2289 Male, age 61, right hemisphere 5.1
2288 Male, age 75, left hemisphere 4.9
1854 Male, age 80, left hemisphere 4.8
1857 Female, age 85, left hemisphere 4.4
2290 Female, age 72, unknown 4.4
2846 Female, age 79, unknown 4.0
1781 Male, age 74, unknown 3.9
Claustrum
nTPM: 4.6
2645 Female, age 72, unknown 5.0
2196 Female, age 79, unknown 4.9
2292 Female, age 85, both hemispheres 4.9
1956 Male, age 74, unknown 4.8
2491 Male, age 75, both hemispheres 4.8
2198 Male, age 80, both hemispheres 4.5
2392 Female, age 94, both hemispheres 4.4
2284 Female, age 91, both hemispheres 4.3
2568 Male, age 61, both hemispheres 4.2
Globus pallidus, externus
nTPM: 6.4
1996 Male, age 80, right hemisphere 7.1
2567 Female, age 72, unknown 6.8
2772 Female, age 79, unknown 6.1
2395 Male, age 75, both hemispheres 6.0
2646 Male, age 61, right hemisphere 6.0
Globus pallidus, internus
nTPM: 6.5
2111 Female, age 85, right hemisphere 7.5
2778 Female, age 91, both hemispheres 7.3
1818 Male, age 74, unknown 6.8
2037 Male, age 80, right hemisphere 6.7
2566 Female, age 72, unknown 6.7
2483 Female, age 94, right hemisphere 5.4
2287 Male, age 75, right hemisphere 5.3
Nucleus accumbens
nTPM: 4.9
2391 Female, age 94, left hemisphere 6.6
2286 Male, age 75, left hemisphere 5.4
2824 Male, age 61, right hemisphere 5.3
2732 Male, age 80, right hemisphere 5.0
1806 Female, age 85, left hemisphere 4.6
1783 Male, age 74, unknown 4.5
2698 Female, age 72, unknown 4.3
1856 Female, age 91, right hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 4.9
2569 Male, age 61, both hemispheres 5.4
2393 Male, age 80, right hemisphere 5.0
2821 Male, age 75, both hemispheres 4.7
2484 Female, age 94, left hemisphere 4.4
Nucleus of the diagonal band
nTPM: 4.0
2029 Male, age 61, right hemisphere 4.6
1979 Male, age 74, unknown 4.1
2195 Female, age 85, both hemispheres 3.9
1812 Female, age 91, both hemispheres 3.7
2775 Male, age 80, right hemisphere 3.7
Olfactory tubercle
nTPM: 3.9
2856 Male, age 75, right hemisphere 4.2
1998 Female, age 91, both hemispheres 4.0
1846 Male, age 80, right hemisphere 3.8
2487 Female, age 94, left hemisphere 3.8
Putamen
nTPM: 5.0
2489 Female, age 72, unknown 5.4
2482 Female, age 94, left hemisphere 5.3
1829 Male, age 74, unknown 5.1
2647 Male, age 75, left hemisphere 5.1
1838 Male, age 80, right hemisphere 4.7
2466 Female, age 79, unknown 4.7
1937 Female, age 91, right hemisphere 4.5
Septal nuclei
nTPM: 4.2
2394 Male, age 61, left hemisphere 5.0
2199 Male, age 80, right hemisphere 4.9
2059 Female, age 85, both hemispheres 4.5
2629 Female, age 94, right hemisphere 4.5
2009 Female, age 91, both hemispheres 3.8
2031 Female, age 72, unknown 3.5
1960 Male, age 74, unknown 3.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 6.2
Min nTPM: 2.1
Std nTPM: 0.7
Median nTPM: 3.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 6.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 5.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 5.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 5.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 5.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 5.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 5.9
Min nTPM: 1.6
Std nTPM: 0.6
Median nTPM: 3.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 5.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 5.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 5.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 5.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 4.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 4.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 4.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 4.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 4.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 4.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 4.6
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Brain - Putamen (basal ganglia)
Average nTPM: 4.1
Samples: 205

Max nTPM: 6.8
Min nTPM: 1.4
Std nTPM: 0.8
Median nTPM: 4.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 6.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 6.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 5.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 5.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 5.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 5.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 5.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 5.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 5.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.4
FF:10164-103B2 76 years, female 10.4
Globus pallidus
Scaled Tags Per Million: 14.0
FF:10161-103A8 76 years, female 14.6
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 7.1
FF:10037-101F1 23-56 years, mixed 7.1
Putamen
Scaled Tags Per Million: 6.3
FF:10176-103C5 60 years, female 6.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.4
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 5.2
Sample C Male 5.2
Sample D Male 5.9
Putamen
nTPM: 6.6
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.5
Sample A Female 8.6
Sample B Female 5.9
Sample C Male 5.5
Sample D Male 6.4
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 5.4
Sample C Male 6.4
Sample D Male 6.5
Ventral pallidum
nTPM: 6.5
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 6.1
Sample C Male 7.8
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.8
Sample A Male 4.0
Sample B Male 3.8
Sample C Female 4.7
Sample D Female 4.4
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.8
Sample A Male 4.0
Sample B Male 5.0
Sample C Female 3.8
Sample D Female 3.8
Ventral forebrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.1
Sample A Male 4.6
Sample B Male 6.2
Sample C Female 4.1
Sample D Female 5.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68077013 Antisense, RP_040929_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68077013 Antisense, RP_040929_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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