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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
123.826
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:80.3 nTPM
HPA:80.3 nTPM
GTEx:74.2 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:153.8 nTPM
Allen mouse:15.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB079051
Amygdala mean intensity 123.826
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 119.564
Basal medial amygdaloid nucleus 91.361
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 91.126
Cortical amygdala 111.243
Central amygdala 97.052
Medial amygdaloid nucleus 91.880

AMYGDALA - HPA Brain RNA-seq
Max nTPM 80.3
Sample id Sample description nTPM
Amygdala
nTPM: 67.9
2814 Male, age 76, right hemisphere 73.7
2517 Female, age 94, left hemisphere 70.6
1987 Female, age 91, left hemisphere 69.9
2514 Male, age 75, right hemisphere 65.9
2695 Female, age 67, right hemisphere 59.5
Basal amygdala
nTPM: 76.1
2243 Female, age 91, right hemisphere 81.6
2685 Female, age 94, left hemisphere 80.2
2110 Male, age 80, left hemisphere 79.6
2609 Male, age 75, right hemisphere 74.4
1955 Male, age 76, both hemispheres 70.9
2827 Female, age 67, right hemisphere 69.7
Central amygdala
nTPM: 75.5
2826 Female, age 94, left hemisphere 86.6
2239 Male, age 80, left hemisphere 75.4
2515 Male, age 75, right hemisphere 74.4
1905 Male, age 76, both hemispheres 72.8
2701 Female, age 91, right hemisphere 68.4
Corticomedial amygdala
nTPM: 73.5
2829 Male, age 80, left hemisphere 81.3
2242 Female, age 91, right hemisphere 76.7
2428 Male, age 75, right hemisphere 73.2
2429 Female, age 94, left hemisphere 72.1
2240 Male, age 76, both hemispheres 69.4
2535 Female, age 67, right hemisphere 68.1
Lateral amygdala
nTPM: 74.9
2534 Female, age 94, left hemisphere 93.1
1883 Male, age 76, both hemispheres 78.3
2256 Male, age 80, left hemisphere 71.2
2516 Male, age 75, right hemisphere 70.2
2255 Female, age 91, right hemisphere 69.0
2830 Female, age 67, right hemisphere 67.5
Stria terminalis, bed nucleus
nTPM: 80.3
1974 Female, age 91, both hemispheres 90.9
2486 Female, age 94, both hemispheres 83.2
2201 Male, age 74, unknown 66.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.2
Samples: 152

Max nTPM: 214.4
Min nTPM: 29.8
Std nTPM: 30.2
Median nTPM: 64.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 214.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 175.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 159.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 150.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 142.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 139.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 124.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 120.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 119.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 117.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 115.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 114.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 114.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 112.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 106.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 105.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 104.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 104.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 103.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 103.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 103.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 100.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 100.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 100.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 96.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 93.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 93.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 88.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 86.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 84.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 84.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 83.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 82.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 81.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 80.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 79.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 77.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 77.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 76.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 72.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 72.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 67.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 67.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 65.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 65.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 64.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 63.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 63.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 62.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 62.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 62.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 62.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 61.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 60.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 60.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 59.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 59.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 59.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 57.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 57.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 57.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 55.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 54.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 54.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 52.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 52.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 51.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 51.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 50.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 48.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 45.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 44.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 44.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 44.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 44.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 43.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 43.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 41.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 41.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 39.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 33.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 32.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 30.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 29.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.4
FF:10151-102I7 76 years, female 70.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.2
Pig sample Sample description nTPM
Amygdala
nTPM: 55.2
Samples: 4

Max nTPM: 79.8
Min nTPM: 44.6
Sample A Female 79.8
Sample B Female 45.8
Sample C Male 50.7
Sample D Male 44.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 153.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 153.8
Samples: 4

Max nTPM: 161.2
Min nTPM: 149.4
Sample A Male 152.6
Sample B Male 149.4
Sample C Female 161.2
Sample D Female 152.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.1
69080068 Antisense, RP_050324_01_H07, Mouse strain C57BL/6J (56 days, male) 15.1

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