MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:135.9 nTPM
HPA:135.9 nTPM
GTEx:136.7 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:142.9 nTPM
Mouse:53.1 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.0
2586 Male, age 75, left hemisphere 155.9
1827 Male, age 72, unknown 128.1
2828 Female, age 72, unknown 126.5
1870 Female, age 42, unknown 113.0
2411 Female, age 72, unknown 102.8
2666 Male, age 74, left hemisphere 101.9
2219 Male, age 76, both hemispheres 99.4
1833 Male, age 53, unknown 98.2
2019 Male, age 18, unknown 89.7
1830 Male, age 51, unknown 84.4
Dorsal raphe nucleus
nTPM: 124.2
1828 Male, age 53, unknown 147.7
2016 Female, age 72, unknown 142.6
2298 Female, age 72, unknown 124.2
2047 Male, age 72, unknown 121.8
2750 Male, age 76, both hemispheres 84.7
Inferior colliculus
nTPM: 135.9
1848 Female, age 42, unknown 140.6
2849 Male, age 72, unknown 138.2
2097 Female, age 72, unknown 137.6
1890 Male, age 53, unknown 127.3
Median raphe nucleus
nTPM: 83.7
2220 Male, age 76, midline 83.7
Pedunculopontine tegmental nucleus
nTPM: 89.6
1921 Female, age 85, both hemispheres 101.4
2334 Male, age 80, both hemispheres 89.8
2338 Male, age 61, both hemispheres 77.6
Periaquaductal grey, anterior
nTPM: 121.2
1795 Male, age 51, unknown 133.0
2502 Female, age 75, unknown 128.1
1947 Male, age 18, unknown 102.5
Periaquaductal grey, dorsal
nTPM: 121.1
1840 Male, age 53, unknown 157.3
2464 Female, age 72, unknown 128.9
1831 Male, age 72, unknown 105.7
2850 Male, age 76, both hemispheres 92.6
Periaquaductal grey, lateral
nTPM: 112.1
2053 Male, age 18, unknown 140.2
2140 Male, age 76, both hemispheres 103.8
2272 Male, age 74, both hemispheres 92.4
Pretectal area
nTPM: 127.4
1944 Female, age 72, unknown 174.3
1816 Male, age 51, unknown 168.5
2667 Female, age 75, unknown 165.3
2224 Female, age 72, unknown 133.2
1817 Female, age 42, unknown 123.1
2007 Male, age 72, unknown 114.3
2825 Male, age 18, unknown 111.0
2316 Male, age 76, right hemisphere 109.9
2273 Male, age 74, both hemispheres 107.7
1815 Male, age 53, unknown 105.7
2407 Male, age 75, both hemispheres 88.7
Red nucleus
nTPM: 102.0
2503 Female, age 72, unknown 122.7
2227 Male, age 72, unknown 115.0
2769 Male, age 72, unknown 112.4
1954 Female, age 42, unknown 108.1
2725 Female, age 75, unknown 106.4
1821 Female, age 72, unknown 106.1
2588 Male, age 74, left hemisphere 104.2
2584 Male, age 75, left hemisphere 94.5
1904 Male, age 53, unknown 93.0
2785 Male, age 18, unknown 91.0
2823 Male, age 76, right hemisphere 88.2
1865 Male, age 51, unknown 82.8
Substantia nigra
nTPM: 133.9
1916 Female, age 42, unknown 155.3
2699 Male, age 18, unknown 152.8
2665 Male, age 74, both hemispheres 147.2
1851 Male, age 51, unknown 136.8
2241 Male, age 72, unknown 134.5
1889 Female, age 72, unknown 132.3
2583 Male, age 75, right hemisphere 128.9
2409 Female, age 72, unknown 128.5
1941 Male, age 53, unknown 111.4
2590 Female, age 75, unknown 111.2
Superior colliculus
nTPM: 118.8
2087 Female, age 72, unknown 145.7
2261 Male, age 18, unknown 143.9
1796 Male, age 53, unknown 142.4
2664 Male, age 75, both hemispheres 134.1
1839 Male, age 51, unknown 124.9
2587 Male, age 74, left hemisphere 114.3
1895 Male, age 76, right hemisphere 104.8
2668 Female, age 75, unknown 94.6
1913 Female, age 42, unknown 92.6
1995 Male, age 72, unknown 90.9
Ventral tegmental area
nTPM: 117.0
2410 Female, age 72, unknown 138.0
1915 Female, age 42, unknown 134.8
1942 Male, age 51, unknown 115.1
2021 Male, age 53, unknown 106.9
2218 Male, age 76, both hemispheres 103.8
2223 Female, age 72, unknown 103.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.7
Samples: 139

Max nTPM: 389.3
Min nTPM: 43.4
Std nTPM: 64.9
Median nTPM: 123.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 389.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 361.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 283.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 282.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 281.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 277.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 277.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 269.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 247.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 245.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 240.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.6
FF:10158-103A5 76 years, female 84.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.9
Pig sample Sample description nTPM
Midbrain
nTPM: 142.9
Samples: 4

Max nTPM: 199.7
Min nTPM: 117.4
Sample A Female 199.7
Sample B Female 125.1
Sample C Male 129.4
Sample D Male 117.4
Periaqueductal gray
nTPM: 108.0
Samples: 3

Max nTPM: 115.3
Min nTPM: 99.5
Sample B Female 115.3
Sample C Male 109.3
Sample D Male 99.5
Substantia nigra
nTPM: 130.8
Samples: 4

Max nTPM: 153.3
Min nTPM: 90.4
Sample A Female 153.3
Sample B Female 90.4
Sample C Male 129.4
Sample D Male 150.1
Superior colliculi
nTPM: 125.2
Samples: 4

Max nTPM: 154.6
Min nTPM: 77.5
Sample A Female 154.6
Sample B Female 77.5
Sample C Male 125.3
Sample D Male 143.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 54.6
Min nTPM: 52.1
Sample A Male 54.6
Sample B Male 53.3
Sample C Female 52.4
Sample D Female 52.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69201588 Antisense, RP_050317_03_B12, Mouse strain C57BL/6J (56 days, male) 5.0
72119592 Antisense, RP_051017_04_A07, Mouse strain C57BL/6J (56 days, male) 2.5
71764156 Antisense, RP_050921_03_C11, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.