MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.0 nTPM
HPA:49.0 nTPM
GTEx:30.3 nTPM
FANTOM5:126.1 Scaled Tags Per Million
Pig:75.7 nTPM
Mouse:9.2 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.5
2586 Male, age 75, left hemisphere 53.5
1830 Male, age 51, unknown 49.1
1833 Male, age 53, unknown 49.0
2828 Female, age 72, unknown 48.2
1870 Female, age 42, unknown 47.8
2019 Male, age 18, unknown 45.6
2666 Male, age 74, left hemisphere 44.6
2411 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 36.5
2219 Male, age 76, both hemispheres 28.8
Dorsal raphe nucleus
nTPM: 39.0
2016 Female, age 72, unknown 43.4
1828 Male, age 53, unknown 41.7
2750 Male, age 76, both hemispheres 41.0
2047 Male, age 72, unknown 34.9
2298 Female, age 72, unknown 33.8
Inferior colliculus
nTPM: 37.6
2849 Male, age 72, unknown 39.6
1848 Female, age 42, unknown 39.4
1890 Male, age 53, unknown 38.4
2097 Female, age 72, unknown 32.9
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Pedunculopontine tegmental nucleus
nTPM: 42.1
2338 Male, age 61, both hemispheres 53.7
2334 Male, age 80, both hemispheres 39.5
1921 Female, age 85, both hemispheres 33.1
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 41.8
1947 Male, age 18, unknown 36.1
1795 Male, age 51, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 38.6
2850 Male, age 76, both hemispheres 41.0
2464 Female, age 72, unknown 40.4
1831 Male, age 72, unknown 38.5
1840 Male, age 53, unknown 34.3
Periaquaductal grey, lateral
nTPM: 39.0
2140 Male, age 76, both hemispheres 43.0
2053 Male, age 18, unknown 39.2
2272 Male, age 74, both hemispheres 34.8
Pretectal area
nTPM: 36.9
2316 Male, age 76, right hemisphere 43.9
2407 Male, age 75, both hemispheres 42.8
1815 Male, age 53, unknown 40.4
2825 Male, age 18, unknown 40.1
2667 Female, age 75, unknown 39.1
1817 Female, age 42, unknown 38.8
2273 Male, age 74, both hemispheres 33.1
1944 Female, age 72, unknown 32.9
2224 Female, age 72, unknown 32.8
2007 Male, age 72, unknown 31.8
1816 Male, age 51, unknown 30.6
Red nucleus
nTPM: 49.0
1865 Male, age 51, unknown 56.3
1904 Male, age 53, unknown 53.0
2769 Male, age 72, unknown 52.4
2227 Male, age 72, unknown 52.3
1954 Female, age 42, unknown 51.2
1821 Female, age 72, unknown 50.5
2823 Male, age 76, right hemisphere 48.7
2503 Female, age 72, unknown 46.3
2584 Male, age 75, left hemisphere 46.0
2785 Male, age 18, unknown 46.0
2588 Male, age 74, left hemisphere 44.1
2725 Female, age 75, unknown 40.9
Substantia nigra
nTPM: 42.9
2699 Male, age 18, unknown 51.8
2665 Male, age 74, both hemispheres 50.2
2590 Female, age 75, unknown 46.2
2583 Male, age 75, right hemisphere 45.0
1851 Male, age 51, unknown 42.8
2409 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 41.5
1916 Female, age 42, unknown 37.3
1889 Female, age 72, unknown 36.7
1941 Male, age 53, unknown 35.3
Superior colliculus
nTPM: 42.4
1995 Male, age 72, unknown 54.5
1913 Female, age 42, unknown 53.6
2664 Male, age 75, both hemispheres 50.2
1839 Male, age 51, unknown 43.2
2587 Male, age 74, left hemisphere 40.7
2668 Female, age 75, unknown 38.4
1895 Male, age 76, right hemisphere 38.0
1796 Male, age 53, unknown 36.6
2087 Female, age 72, unknown 35.7
2261 Male, age 18, unknown 32.9
Ventral tegmental area
nTPM: 40.6
2223 Female, age 72, unknown 45.9
2021 Male, age 53, unknown 42.4
2410 Female, age 72, unknown 41.6
1942 Male, age 51, unknown 39.3
1915 Female, age 42, unknown 37.9
2218 Male, age 76, both hemispheres 36.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 139

Max nTPM: 72.7
Min nTPM: 6.5
Std nTPM: 10.4
Median nTPM: 28.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 66.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 51.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 51.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 49.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 48.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.1
FF:10158-103A5 76 years, female 126.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.7
Pig sample Sample description nTPM
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 116.2
Min nTPM: 43.6
Sample A Female 116.2
Sample B Female 72.1
Sample C Male 43.6
Sample D Male 44.1
Periaqueductal gray
nTPM: 62.7
Samples: 3

Max nTPM: 68.3
Min nTPM: 59.7
Sample B Female 68.3
Sample C Male 59.7
Sample D Male 60.2
Substantia nigra
nTPM: 75.7
Samples: 4

Max nTPM: 97.6
Min nTPM: 62.9
Sample A Female 62.9
Sample B Female 73.4
Sample C Male 68.9
Sample D Male 97.6
Superior colliculi
nTPM: 61.0
Samples: 4

Max nTPM: 67.7
Min nTPM: 54.2
Sample A Female 62.7
Sample B Female 59.3
Sample C Male 54.2
Sample D Male 67.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.9
Sample A Male 9.9
Sample B Male 8.9
Sample C Female 9.2
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70194958 Antisense, RP_050517_02_B02, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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