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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.0 nTPM
GTEx:235.0 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:63.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 235.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 235.0
Samples: 105

Max nTPM: 449.7
Min nTPM: 84.2
Std nTPM: 87.2
Median nTPM:
414_1 84 years, female 449.7
415_1 77 years, female 434.5
237_1 82 years, male 431.4
490_1 67 years, female 423.8
355_1 70 years, female 400.0
265_1 87 years, male 395.6
217_1 76 years, male 394.9
246_1 77 years, male 392.4
375_1 74 years, female 389.5
162_1 79 years, female 386.6
142_1 61 years, female 380.8
32_1 67 years, male 362.4
352_1 62 years, male 353.1
466_1 57 years, female 346.4
229_1 69 years, female 345.0
35_1 74 years, female 339.0
389_1 86 years, female 334.7
42_1 85 years, male 332.3
266_1 85 years, male 329.8
379_1 60 years, male 319.4
81_1 67 years, male 315.9
172_1 72 years, female 313.8
491_1 89 years, female 305.0
115_1 83 years, male 304.9
149_1 88 years, male 294.2
126_1 63 years, male 291.2
243_1 75 years, male 281.1
468_1 89 years, male 280.6
254_1 77 years, female 280.5
413_1 59 years, female 279.2
394_1 75 years, female 276.8
425_1 59 years, female 264.5
354_1 81 years, female 263.5
404_1 82 years, female 261.7
347_1 72 years, male 258.6
386_1 76 years, male 254.3
503_1 68 years, male 252.7
405_1 91 years, male 249.7
384_1 83 years, male 247.9
153_1 70 years, female 246.4
9_1 66 years, female 246.2
99_1 64 years, male 246.0
89_1 63 years, male 245.4
377_1 82 years, female 244.5
43_1 64 years, female 241.5
526_1 61 years, male 240.6
6_1 73 years, female 234.9
447_1 81 years, male 229.0
517_1 88 years, male 225.4
189_1 76 years, male 221.1
356_1 87 years, female 220.4
120_1 70 years, female 220.3
307_1 66 years, female 219.2
349_1 83 years, male 219.0
286_1 68 years, female 217.5
117_1 61 years, male 217.4
396_1 62 years, male 216.7
109_1 81 years, female 214.0
119_1 70 years, female 206.7
319_1 81 years, male 205.6
324_1 76 years, male 205.0
315_1 62 years, female 204.6
313_1 79 years, female 203.5
452_1 88 years, female 200.6
291_1 76 years, male 198.2
17_1 71 years, male 195.3
218_1 71 years, female 190.5
18_1 88 years, male 188.1
350_1 84 years, female 186.5
348_1 84 years, male 184.9
173_1 67 years, male 184.0
163_1 78 years, male 182.8
314_1 67 years, male 181.9
321_1 62 years, female 181.5
177_1 74 years, male 180.6
137_1 83 years, male 179.4
376_1 75 years, female 177.7
251_1 78 years, male 174.6
499_1 55 years, female 172.2
264_1 73 years, female 170.5
351_1 91 years, male 168.0
480_1 63 years, male 167.2
292_1 71 years, male 164.5
318_1 68 years, male 163.8
145_1 84 years, male 160.7
139_1 64 years, female 152.2
288_1 66 years, female 151.5
518_1 75 years, female 151.2
335_1 73 years, female 148.9
4_1 88 years, female 148.7
353_1 82 years, female 135.4
41_1 94 years, female 134.2
316_1 62 years, male 131.7
320_1 89 years, female 130.5
311_1 78 years, male 129.0
295_1 61 years, female 124.3
506_1 65 years, male 121.9
293_1 68 years, female 121.7
317_1 60 years, male 117.9
501_1 88 years, male 117.6
2_1 77 years, female 110.9
322_1 76 years, male 109.7
406_1 79 years, male 96.6
308_1 70 years, female 95.7
495_1 57 years, female 84.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 19.8
FF:10030-101E3 24-65 years, mixed 19.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.6
Pig sample Sample description nTPM
Retina
nTPM: 63.6
Samples: 4

Max nTPM: 70.2
Min nTPM: 51.8
Sample A Female 62.7
Sample B Female 51.8
Sample C Male 70.2
Sample D Male 69.5

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by the Knut & Alice Wallenberg Foundation.