MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:10.6 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:8.4 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.7
2828 Female, age 72, unknown 39.6
2586 Male, age 75, left hemisphere 36.5
2666 Male, age 74, left hemisphere 36.0
1833 Male, age 53, unknown 31.8
2219 Male, age 76, both hemispheres 26.4
1827 Male, age 72, unknown 23.8
1830 Male, age 51, unknown 22.0
2019 Male, age 18, unknown 16.3
1870 Female, age 42, unknown 13.1
2411 Female, age 72, unknown 11.1
Dorsal raphe nucleus
nTPM: 14.4
1828 Male, age 53, unknown 20.4
2047 Male, age 72, unknown 18.1
2016 Female, age 72, unknown 15.2
2750 Male, age 76, both hemispheres 12.7
2298 Female, age 72, unknown 5.6
Inferior colliculus
nTPM: 25.0
2849 Male, age 72, unknown 49.7
1848 Female, age 42, unknown 20.3
1890 Male, age 53, unknown 19.4
2097 Female, age 72, unknown 10.7
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Pedunculopontine tegmental nucleus
nTPM: 14.9
2334 Male, age 80, both hemispheres 20.6
1921 Female, age 85, both hemispheres 13.7
2338 Male, age 61, both hemispheres 10.5
Periaquaductal grey, anterior
nTPM: 18.3
2502 Female, age 75, unknown 21.9
1795 Male, age 51, unknown 21.4
1947 Male, age 18, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 25.1
2850 Male, age 76, both hemispheres 39.7
2464 Female, age 72, unknown 25.5
1840 Male, age 53, unknown 20.0
1831 Male, age 72, unknown 15.2
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 32.2
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 15.8
Pretectal area
nTPM: 24.1
1816 Male, age 51, unknown 34.2
1944 Female, age 72, unknown 32.5
1817 Female, age 42, unknown 29.4
1815 Male, age 53, unknown 29.0
2667 Female, age 75, unknown 28.3
2825 Male, age 18, unknown 27.0
2007 Male, age 72, unknown 25.6
2407 Male, age 75, both hemispheres 21.1
2316 Male, age 76, right hemisphere 15.9
2224 Female, age 72, unknown 13.7
2273 Male, age 74, both hemispheres 9.1
Red nucleus
nTPM: 25.9
2588 Male, age 74, left hemisphere 31.2
2503 Female, age 72, unknown 29.8
1904 Male, age 53, unknown 29.2
2823 Male, age 76, right hemisphere 29.0
1954 Female, age 42, unknown 28.8
2769 Male, age 72, unknown 28.5
2227 Male, age 72, unknown 26.3
1865 Male, age 51, unknown 24.2
2584 Male, age 75, left hemisphere 23.1
2725 Female, age 75, unknown 22.5
2785 Male, age 18, unknown 21.8
1821 Female, age 72, unknown 16.8
Substantia nigra
nTPM: 22.7
2699 Male, age 18, unknown 49.2
2665 Male, age 74, both hemispheres 46.5
2583 Male, age 75, right hemisphere 24.1
1916 Female, age 42, unknown 20.4
1889 Female, age 72, unknown 19.2
2590 Female, age 75, unknown 18.7
1851 Male, age 51, unknown 15.9
2409 Female, age 72, unknown 15.8
1941 Male, age 53, unknown 8.7
2241 Male, age 72, unknown 8.1
Superior colliculus
nTPM: 20.9
2664 Male, age 75, both hemispheres 36.3
2087 Female, age 72, unknown 30.2
1796 Male, age 53, unknown 21.5
2261 Male, age 18, unknown 20.2
2587 Male, age 74, left hemisphere 19.5
2668 Female, age 75, unknown 18.2
1895 Male, age 76, right hemisphere 17.2
1995 Male, age 72, unknown 16.3
1839 Male, age 51, unknown 15.2
1913 Female, age 42, unknown 14.3
Ventral tegmental area
nTPM: 15.9
2218 Male, age 76, both hemispheres 22.7
1942 Male, age 51, unknown 18.3
2021 Male, age 53, unknown 16.2
1915 Female, age 42, unknown 13.6
2410 Female, age 72, unknown 12.8
2223 Female, age 72, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 31.4
Min nTPM: 4.4
Std nTPM: 4.1
Median nTPM: 9.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 31.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 22.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 18.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 17.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 16.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 16.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 16.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.5
FF:10158-103A5 76 years, female 82.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 25.9
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 15.8
Sample C Male 25.9
Sample D Male 20.2
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 17.1
Min nTPM: 14.1
Sample B Female 15.3
Sample C Male 17.1
Sample D Male 14.1
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 15.8
Sample C Male 22.0
Sample D Male 18.7
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.0
Sample A Female 16.3
Sample B Female 14.0
Sample C Male 21.4
Sample D Male 21.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.6
Sample A Male 8.0
Sample B Male 7.6
Sample C Female 8.9
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
79591687 Antisense, RP_071204_04_H02, Mouse strain C57BL/6J (56 days, male) 3.7
79904156 Antisense, RP_071204_04_H02, Mouse strain C57BL/6J (56 days, male) 1.5
73808468 Antisense, RP_051212_03_A09, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.