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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB001979
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042434
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 198.2
Min nTPM: 52.3
Std nTPM: 28.4
Median nTPM:
415_1
77 years, female
198.2
172_1
72 years, female
192.8
237_1
82 years, male
183.9
490_1
67 years, female
169.8
229_1
69 years, female
168.7
352_1
62 years, male
168.3
425_1
59 years, female
161.1
266_1
85 years, male
155.9
35_1
74 years, female
153.2
375_1
74 years, female
150.1
347_1
72 years, male
147.0
99_1
64 years, male
145.8
218_1
71 years, female
145.3
217_1
76 years, male
143.6
177_1
74 years, male
141.1
405_1
91 years, male
139.2
468_1
89 years, male
138.6
335_1
73 years, female
138.5
163_1
78 years, male
135.3
117_1
61 years, male
133.4
9_1
66 years, female
133.1
355_1
70 years, female
132.3
495_1
57 years, female
131.1
316_1
62 years, male
130.7
286_1
68 years, female
130.6
386_1
76 years, male
129.6
6_1
73 years, female
129.3
414_1
84 years, female
128.9
480_1
63 years, male
128.6
466_1
57 years, female
128.5
243_1
75 years, male
127.4
32_1
67 years, male
126.6
137_1
83 years, male
125.9
324_1
76 years, male
125.7
246_1
77 years, male
125.2
447_1
81 years, male
124.7
350_1
84 years, female
122.8
251_1
78 years, male
122.2
526_1
61 years, male
121.9
389_1
86 years, female
121.6
81_1
67 years, male
119.3
406_1
79 years, male
118.7
353_1
82 years, female
118.4
518_1
75 years, female
117.0
115_1
83 years, male
116.7
499_1
55 years, female
116.7
142_1
61 years, female
116.3
126_1
63 years, male
116.1
42_1
85 years, male
115.7
265_1
87 years, male
115.7
503_1
68 years, male
115.0
376_1
75 years, female
114.4
377_1
82 years, female
114.3
321_1
62 years, female
114.1
292_1
71 years, male
112.5
354_1
81 years, female
111.2
162_1
79 years, female
111.0
319_1
81 years, male
111.0
404_1
82 years, female
110.4
145_1
84 years, male
109.4
318_1
68 years, male
108.5
43_1
64 years, female
108.4
349_1
83 years, male
107.4
307_1
66 years, female
106.9
313_1
79 years, female
106.1
18_1
88 years, male
102.8
311_1
78 years, male
102.1
189_1
76 years, male
100.5
348_1
84 years, male
99.8
379_1
60 years, male
99.7
394_1
75 years, female
99.5
293_1
68 years, female
96.7
413_1
59 years, female
96.4
396_1
62 years, male
95.7
320_1
89 years, female
94.7
384_1
83 years, male
94.1
153_1
70 years, female
93.9
517_1
88 years, male
93.2
322_1
76 years, male
92.6
491_1
89 years, female
92.4
315_1
62 years, female
92.2
356_1
87 years, female
92.1
149_1
88 years, male
91.3
291_1
76 years, male
90.3
173_1
67 years, male
89.6
254_1
77 years, female
89.5
119_1
70 years, female
88.4
2_1
77 years, female
87.2
109_1
81 years, female
87.0
351_1
91 years, male
85.8
264_1
73 years, female
84.7
317_1
60 years, male
82.8
89_1
63 years, male
77.2
17_1
71 years, male
76.8
288_1
66 years, female
75.5
308_1
70 years, female
74.9
314_1
67 years, male
73.0
501_1
88 years, male
72.5
506_1
65 years, male
69.6
139_1
64 years, female
69.3
4_1
88 years, female
68.9
41_1
94 years, female
66.8
120_1
70 years, female
66.8
295_1
61 years, female
52.3
452_1
88 years, female
52.3
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
