BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:8.9 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:20.7 nTPM
Allen mouse:3.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.5
2481 Female, age 94, left hemisphere 16.2
1781 Male, age 74, unknown 14.2
2289 Male, age 61, right hemisphere 13.1
2288 Male, age 75, left hemisphere 12.0
2846 Female, age 79, unknown 11.9
2290 Female, age 72, unknown 11.6
1854 Male, age 80, left hemisphere 10.8
1857 Female, age 85, left hemisphere 10.6
Claustrum
nTPM: 11.2
2292 Female, age 85, both hemispheres 12.7
2392 Female, age 94, both hemispheres 12.1
1956 Male, age 74, unknown 11.9
2198 Male, age 80, both hemispheres 11.7
2196 Female, age 79, unknown 11.6
2491 Male, age 75, both hemispheres 10.9
2284 Female, age 91, both hemispheres 10.5
2645 Female, age 72, unknown 9.9
2568 Male, age 61, both hemispheres 9.7
Globus pallidus, externus
nTPM: 14.0
1996 Male, age 80, right hemisphere 14.9
2772 Female, age 79, unknown 14.7
2646 Male, age 61, right hemisphere 14.0
2395 Male, age 75, both hemispheres 13.9
2567 Female, age 72, unknown 12.7
Globus pallidus, internus
nTPM: 15.3
2287 Male, age 75, right hemisphere 17.1
2778 Female, age 91, both hemispheres 16.7
2111 Female, age 85, right hemisphere 16.6
2483 Female, age 94, right hemisphere 16.0
1818 Male, age 74, unknown 14.2
2037 Male, age 80, right hemisphere 13.7
2566 Female, age 72, unknown 12.5
Nucleus accumbens
nTPM: 11.8
2391 Female, age 94, left hemisphere 15.6
2732 Male, age 80, right hemisphere 12.2
2286 Male, age 75, left hemisphere 12.0
1806 Female, age 85, left hemisphere 11.9
2698 Female, age 72, unknown 11.3
1783 Male, age 74, unknown 11.2
2824 Male, age 61, right hemisphere 10.6
1856 Female, age 91, right hemisphere 9.9
Nucleus basalis of Meynert
nTPM: 11.9
2569 Male, age 61, both hemispheres 13.9
2484 Female, age 94, left hemisphere 12.7
2393 Male, age 80, right hemisphere 10.5
2821 Male, age 75, both hemispheres 10.5
Nucleus of the diagonal band
nTPM: 10.1
1812 Female, age 91, both hemispheres 10.6
1979 Male, age 74, unknown 10.5
2195 Female, age 85, both hemispheres 10.5
2029 Male, age 61, right hemisphere 9.5
2775 Male, age 80, right hemisphere 9.3
Olfactory tubercle
nTPM: 10.1
2856 Male, age 75, right hemisphere 10.6
2487 Female, age 94, left hemisphere 10.2
1846 Male, age 80, right hemisphere 10.1
1998 Female, age 91, both hemispheres 9.5
Putamen
nTPM: 11.8
2482 Female, age 94, left hemisphere 13.2
2647 Male, age 75, left hemisphere 12.5
1829 Male, age 74, unknown 11.8
2489 Female, age 72, unknown 11.8
2466 Female, age 79, unknown 11.7
1838 Male, age 80, right hemisphere 10.7
1937 Female, age 91, right hemisphere 10.5
Septal nuclei
nTPM: 10.5
2031 Female, age 72, unknown 11.2
2629 Female, age 94, right hemisphere 11.2
2394 Male, age 61, left hemisphere 10.6
1960 Male, age 74, unknown 10.3
2009 Female, age 91, both hemispheres 10.2
2059 Female, age 85, both hemispheres 10.0
2199 Male, age 80, right hemisphere 9.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.8
Samples: 246

Max nTPM: 18.5
Min nTPM: 5.0
Std nTPM: 1.6
Median nTPM: 8.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 18.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 16.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 13.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 13.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 12.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 12.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 12.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 12.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 12.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.4
Samples: 246

Max nTPM: 19.6
Min nTPM: 5.1
Std nTPM: 1.7
Median nTPM: 8.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 19.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 18.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 13.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 13.2
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 13.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 12.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 12.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 12.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 12.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 11.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 11.5
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Brain - Putamen (basal ganglia)
Average nTPM: 8.9
Samples: 205

Max nTPM: 14.1
Min nTPM: 6.0
Std nTPM: 1.5
Median nTPM: 8.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 14.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 14.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 13.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 13.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 12.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 12.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 12.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 12.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 12.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 12.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 12.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.3
FF:10164-103B2 76 years, female 40.3
Globus pallidus
Scaled Tags Per Million: 56.8
FF:10161-103A8 76 years, female 61.6
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 34.1
FF:10037-101F1 23-56 years, mixed 34.1
Putamen
Scaled Tags Per Million: 39.8
FF:10176-103C5 60 years, female 39.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Caudate
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 13.5
Sample C Male 15.5
Sample D Male 13.9
Putamen
nTPM: 16.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.1
Sample A Female 15.1
Sample B Female 13.1
Sample C Male 21.3
Sample D Male 16.5
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.3
Sample A Female 16.4
Sample B Female 14.3
Sample C Male 17.7
Sample D Male 13.3
Ventral pallidum
nTPM: 15.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 14.6
Sample C Male 17.4
Sample D Male 15.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.4
Sample A Male 21.4
Sample B Male 21.5
Sample C Female 18.4
Sample D Female 21.3
Septum
nTPM: 19.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 18.6
Sample A Male 18.6
Sample B Male 20.1
Sample C Female 19.5
Sample D Female 21.3
Ventral forebrain
nTPM: 19.4
Samples: 4

Max nTPM: 21.2
Min nTPM: 18.0
Sample A Male 18.0
Sample B Male 21.2
Sample C Female 18.5
Sample D Female 19.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
70523739 Antisense, RP_050301_02_C04, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.0
70523739 Antisense, RP_050301_02_C04, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

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