BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:48.7 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:5.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045792
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.5
2846 Female, age 79, unknown 35.4
2290 Female, age 72, unknown 34.0
1857 Female, age 85, left hemisphere 33.9
1781 Male, age 74, unknown 31.8
2481 Female, age 94, left hemisphere 30.7
2289 Male, age 61, right hemisphere 29.5
1854 Male, age 80, left hemisphere 29.4
2288 Male, age 75, left hemisphere 27.6
Claustrum
nTPM: 30.9
2568 Male, age 61, both hemispheres 34.1
2198 Male, age 80, both hemispheres 33.3
2292 Female, age 85, both hemispheres 31.9
2196 Female, age 79, unknown 30.6
2645 Female, age 72, unknown 30.3
1956 Male, age 74, unknown 30.2
2284 Female, age 91, both hemispheres 29.6
2392 Female, age 94, both hemispheres 29.0
2491 Male, age 75, both hemispheres 29.0
Globus pallidus, externus
nTPM: 29.8
1996 Male, age 80, right hemisphere 30.7
2772 Female, age 79, unknown 30.4
2395 Male, age 75, both hemispheres 29.6
2646 Male, age 61, right hemisphere 29.5
2567 Female, age 72, unknown 28.6
Globus pallidus, internus
nTPM: 29.4
2037 Male, age 80, right hemisphere 30.4
2778 Female, age 91, both hemispheres 30.3
2287 Male, age 75, right hemisphere 30.0
2483 Female, age 94, right hemisphere 30.0
1818 Male, age 74, unknown 28.6
2566 Female, age 72, unknown 28.5
2111 Female, age 85, right hemisphere 27.5
Nucleus accumbens
nTPM: 30.1
1806 Female, age 85, left hemisphere 33.4
1783 Male, age 74, unknown 33.1
1856 Female, age 91, right hemisphere 31.6
2698 Female, age 72, unknown 31.2
2824 Male, age 61, right hemisphere 29.3
2391 Female, age 94, left hemisphere 28.1
2732 Male, age 80, right hemisphere 27.4
2286 Male, age 75, left hemisphere 26.8
Nucleus basalis of Meynert
nTPM: 29.8
2484 Female, age 94, left hemisphere 31.4
2569 Male, age 61, both hemispheres 30.5
2393 Male, age 80, right hemisphere 29.4
2821 Male, age 75, both hemispheres 27.8
Nucleus of the diagonal band
nTPM: 28.6
2195 Female, age 85, both hemispheres 29.4
1812 Female, age 91, both hemispheres 28.7
2775 Male, age 80, right hemisphere 28.6
2029 Male, age 61, right hemisphere 28.3
1979 Male, age 74, unknown 28.1
Olfactory tubercle
nTPM: 27.9
1998 Female, age 91, both hemispheres 28.8
2856 Male, age 75, right hemisphere 27.8
1846 Male, age 80, right hemisphere 27.7
2487 Female, age 94, left hemisphere 27.3
Putamen
nTPM: 31.0
2466 Female, age 79, unknown 34.7
2489 Female, age 72, unknown 31.6
1838 Male, age 80, right hemisphere 31.5
1829 Male, age 74, unknown 30.2
2482 Female, age 94, left hemisphere 30.2
1937 Female, age 91, right hemisphere 29.9
2647 Male, age 75, left hemisphere 28.6
Septal nuclei
nTPM: 28.6
1960 Male, age 74, unknown 31.9
2031 Female, age 72, unknown 29.6
2059 Female, age 85, both hemispheres 28.4
2199 Male, age 80, right hemisphere 27.9
2394 Male, age 61, left hemisphere 27.7
2629 Female, age 94, right hemisphere 27.7
2009 Female, age 91, both hemispheres 27.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 90.3
Min nTPM: 17.5
Std nTPM: 12.4
Median nTPM: 43.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 90.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 80.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 78.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 77.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 75.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 73.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 72.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 71.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 71.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.3
Samples: 246

Max nTPM: 98.9
Min nTPM: 13.7
Std nTPM: 13.7
Median nTPM: 38.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 98.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 96.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 77.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 76.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 74.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 73.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 72.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 72.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 72.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 71.0
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Brain - Putamen (basal ganglia)
Average nTPM: 48.7
Samples: 205

Max nTPM: 87.7
Min nTPM: 21.7
Std nTPM: 14.1
Median nTPM: 46.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 87.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 84.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 84.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 80.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 78.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 77.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 77.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 76.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 76.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 76.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 75.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.3
FF:10164-103B2 76 years, female 11.3
Globus pallidus
Scaled Tags Per Million: 9.4
FF:10161-103A8 76 years, female 12.6
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 10.2
FF:10037-101F1 23-56 years, mixed 10.2
Putamen
Scaled Tags Per Million: 12.0
FF:10176-103C5 60 years, female 12.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.2
Pig sample Sample description nTPM
Caudate
nTPM: 8.2
Samples: 4

Max nTPM: 11.8
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 8.6
Sample C Male 11.8
Sample D Male 7.2
Putamen
nTPM: 9.3
Samples: 4

Max nTPM: 17.7
Min nTPM: 5.8
Sample A Female 6.1
Sample B Female 5.8
Sample C Male 17.7
Sample D Male 7.4
Septum
nTPM: 8.7
Samples: 4

Max nTPM: 13.1
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 9.1
Sample C Male 13.1
Sample D Male 7.0
Ventral pallidum
nTPM: 8.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 9.6
Sample C Male 13.3
Sample D Male 6.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.6
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.0
Sample A Male 3.0
Sample B Male 3.3
Sample C Female 4.7
Sample D Female 3.3
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.5
Sample A Male 4.5
Sample B Male 3.7
Sample C Female 4.0
Sample D Female 3.5
Ventral forebrain
nTPM: 5.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.4
Sample A Male 6.2
Sample B Male 4.4
Sample C Female 7.3
Sample D Female 5.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74427086 Antisense, RP_051206_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74427086 Antisense, RP_051206_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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