MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:38.7 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:4.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2666 Male, age 74, left hemisphere 29.6
2586 Male, age 75, left hemisphere 29.5
2019 Male, age 18, unknown 28.5
1830 Male, age 51, unknown 28.2
2828 Female, age 72, unknown 28.1
1870 Female, age 42, unknown 27.9
1833 Male, age 53, unknown 27.4
1827 Male, age 72, unknown 27.3
2411 Female, age 72, unknown 27.3
2219 Male, age 76, both hemispheres 27.2
Dorsal raphe nucleus
nTPM: 29.4
1828 Male, age 53, unknown 31.2
2298 Female, age 72, unknown 29.7
2047 Male, age 72, unknown 29.4
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 28.5
2097 Female, age 72, unknown 29.5
1890 Male, age 53, unknown 28.9
1848 Female, age 42, unknown 27.9
2849 Male, age 72, unknown 27.9
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 28.8
2338 Male, age 61, both hemispheres 31.3
2334 Male, age 80, both hemispheres 28.1
1921 Female, age 85, both hemispheres 26.9
Periaquaductal grey, anterior
nTPM: 28.6
2502 Female, age 75, unknown 29.8
1795 Male, age 51, unknown 28.6
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 27.4
1831 Male, age 72, unknown 28.6
2464 Female, age 72, unknown 27.1
2850 Male, age 76, both hemispheres 27.1
1840 Male, age 53, unknown 26.7
Periaquaductal grey, lateral
nTPM: 28.3
2272 Male, age 74, both hemispheres 29.7
2053 Male, age 18, unknown 28.4
2140 Male, age 76, both hemispheres 26.8
Pretectal area
nTPM: 28.1
2007 Male, age 72, unknown 29.4
2224 Female, age 72, unknown 29.0
2273 Male, age 74, both hemispheres 29.0
2667 Female, age 75, unknown 28.7
1944 Female, age 72, unknown 28.2
1817 Female, age 42, unknown 28.1
1815 Male, age 53, unknown 28.0
1816 Male, age 51, unknown 27.8
2316 Male, age 76, right hemisphere 27.3
2825 Male, age 18, unknown 27.0
2407 Male, age 75, both hemispheres 26.8
Red nucleus
nTPM: 29.0
2725 Female, age 75, unknown 30.4
2823 Male, age 76, right hemisphere 29.5
2769 Male, age 72, unknown 29.4
1821 Female, age 72, unknown 29.2
2785 Male, age 18, unknown 29.2
2503 Female, age 72, unknown 29.1
2584 Male, age 75, left hemisphere 29.1
2588 Male, age 74, left hemisphere 28.9
1865 Male, age 51, unknown 28.7
2227 Male, age 72, unknown 28.7
1954 Female, age 42, unknown 28.5
1904 Male, age 53, unknown 27.9
Substantia nigra
nTPM: 30.1
1916 Female, age 42, unknown 36.8
1851 Male, age 51, unknown 33.0
2699 Male, age 18, unknown 32.0
1941 Male, age 53, unknown 30.9
2665 Male, age 74, both hemispheres 29.5
1889 Female, age 72, unknown 28.8
2583 Male, age 75, right hemisphere 28.4
2409 Female, age 72, unknown 27.9
2241 Male, age 72, unknown 27.2
2590 Female, age 75, unknown 26.7
Superior colliculus
nTPM: 27.9
1995 Male, age 72, unknown 29.2
2587 Male, age 74, left hemisphere 29.0
1796 Male, age 53, unknown 28.6
1913 Female, age 42, unknown 28.4
2668 Female, age 75, unknown 28.0
2261 Male, age 18, unknown 27.7
2087 Female, age 72, unknown 27.6
1895 Male, age 76, right hemisphere 27.3
1839 Male, age 51, unknown 27.1
2664 Male, age 75, both hemispheres 26.1
Ventral tegmental area
nTPM: 30.0
1915 Female, age 42, unknown 32.6
2218 Male, age 76, both hemispheres 30.9
2223 Female, age 72, unknown 29.8
2410 Female, age 72, unknown 29.4
2021 Male, age 53, unknown 28.8
1942 Male, age 51, unknown 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 139

Max nTPM: 166.1
Min nTPM: 14.4
Std nTPM: 18.8
Median nTPM: 34.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 166.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 130.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 85.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 70.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 69.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 62.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.0
FF:10158-103A5 76 years, female 13.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 10.2
Sample A Female 12.2
Sample B Female 10.2
Sample C Male 13.2
Sample D Male 11.1
Periaqueductal gray
nTPM: 13.0
Samples: 3

Max nTPM: 16.1
Min nTPM: 11.3
Sample B Female 11.6
Sample C Male 16.1
Sample D Male 11.3
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 11.4
Sample C Male 16.6
Sample D Male 10.8
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.3
Sample A Female 12.5
Sample B Female 15.4
Sample C Male 17.9
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.2
Sample A Male 4.8
Sample B Male 4.2
Sample C Female 4.6
Sample D Female 4.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74427086 Antisense, RP_051206_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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