MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:140.7 nTPM
HPA:140.7 nTPM
GTEx:80.4 nTPM
FANTOM5:134.1 Scaled Tags Per Million
Pig:117.0 nTPM
Mouse:25.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.8
2586 Male, age 75, left hemisphere 138.0
2666 Male, age 74, left hemisphere 107.2
1870 Female, age 42, unknown 104.0
1833 Male, age 53, unknown 97.0
2219 Male, age 76, both hemispheres 96.7
2828 Female, age 72, unknown 94.7
2411 Female, age 72, unknown 89.4
1830 Male, age 51, unknown 88.4
2019 Male, age 18, unknown 87.2
1827 Male, age 72, unknown 85.7
Dorsal raphe nucleus
nTPM: 114.9
2047 Male, age 72, unknown 147.3
2298 Female, age 72, unknown 115.4
2750 Male, age 76, both hemispheres 109.7
1828 Male, age 53, unknown 103.9
2016 Female, age 72, unknown 98.4
Inferior colliculus
nTPM: 99.4
1848 Female, age 42, unknown 107.5
2849 Male, age 72, unknown 105.2
1890 Male, age 53, unknown 98.1
2097 Female, age 72, unknown 86.7
Median raphe nucleus
nTPM: 140.7
2220 Male, age 76, midline 140.7
Pedunculopontine tegmental nucleus
nTPM: 93.9
1921 Female, age 85, both hemispheres 98.0
2334 Male, age 80, both hemispheres 95.8
2338 Male, age 61, both hemispheres 87.8
Periaquaductal grey, anterior
nTPM: 84.6
1795 Male, age 51, unknown 88.3
2502 Female, age 75, unknown 88.2
1947 Male, age 18, unknown 77.4
Periaquaductal grey, dorsal
nTPM: 97.8
1840 Male, age 53, unknown 112.3
2850 Male, age 76, both hemispheres 102.3
2464 Female, age 72, unknown 90.4
1831 Male, age 72, unknown 86.4
Periaquaductal grey, lateral
nTPM: 91.7
2053 Male, age 18, unknown 100.4
2140 Male, age 76, both hemispheres 95.3
2272 Male, age 74, both hemispheres 79.3
Pretectal area
nTPM: 89.6
1817 Female, age 42, unknown 100.7
2825 Male, age 18, unknown 100.7
2224 Female, age 72, unknown 96.5
2007 Male, age 72, unknown 92.6
2407 Male, age 75, both hemispheres 90.0
1815 Male, age 53, unknown 88.7
2667 Female, age 75, unknown 88.7
1944 Female, age 72, unknown 88.2
1816 Male, age 51, unknown 84.4
2316 Male, age 76, right hemisphere 80.1
2273 Male, age 74, both hemispheres 75.4
Red nucleus
nTPM: 84.9
2584 Male, age 75, left hemisphere 100.0
2588 Male, age 74, left hemisphere 96.2
2227 Male, age 72, unknown 86.7
2769 Male, age 72, unknown 86.4
2785 Male, age 18, unknown 86.4
2503 Female, age 72, unknown 84.8
1954 Female, age 42, unknown 84.0
1821 Female, age 72, unknown 83.2
1904 Male, age 53, unknown 80.2
2725 Female, age 75, unknown 79.8
1865 Male, age 51, unknown 77.4
2823 Male, age 76, right hemisphere 74.0
Substantia nigra
nTPM: 104.1
2665 Male, age 74, both hemispheres 124.8
1916 Female, age 42, unknown 117.1
2583 Male, age 75, right hemisphere 110.1
1941 Male, age 53, unknown 107.1
1851 Male, age 51, unknown 105.2
2241 Male, age 72, unknown 102.4
2699 Male, age 18, unknown 102.2
1889 Female, age 72, unknown 95.4
2590 Female, age 75, unknown 91.6
2409 Female, age 72, unknown 85.4
Superior colliculus
nTPM: 91.6
2664 Male, age 75, both hemispheres 112.9
2668 Female, age 75, unknown 103.1
1839 Male, age 51, unknown 97.2
1796 Male, age 53, unknown 91.8
1895 Male, age 76, right hemisphere 90.7
2587 Male, age 74, left hemisphere 88.2
2087 Female, age 72, unknown 87.6
2261 Male, age 18, unknown 87.6
1995 Male, age 72, unknown 81.6
1913 Female, age 42, unknown 74.9
Ventral tegmental area
nTPM: 107.8
1942 Male, age 51, unknown 122.5
1915 Female, age 42, unknown 118.0
2223 Female, age 72, unknown 106.9
2218 Male, age 76, both hemispheres 104.0
2021 Male, age 53, unknown 101.6
2410 Female, age 72, unknown 94.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.4
Samples: 139

Max nTPM: 166.0
Min nTPM: 19.5
Std nTPM: 24.6
Median nTPM: 79.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 166.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 133.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 125.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 122.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 119.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 119.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 118.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 116.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 116.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 114.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 113.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.1
FF:10158-103A5 76 years, female 134.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.0
Pig sample Sample description nTPM
Midbrain
nTPM: 81.1
Samples: 4

Max nTPM: 127.1
Min nTPM: 54.7
Sample A Female 127.1
Sample B Female 61.9
Sample C Male 80.6
Sample D Male 54.7
Periaqueductal gray
nTPM: 55.1
Samples: 3

Max nTPM: 68.0
Min nTPM: 47.7
Sample B Female 49.5
Sample C Male 68.0
Sample D Male 47.7
Substantia nigra
nTPM: 92.2
Samples: 4

Max nTPM: 135.7
Min nTPM: 67.4
Sample A Female 90.6
Sample B Female 135.7
Sample C Male 67.4
Sample D Male 75.1
Superior colliculi
nTPM: 117.1
Samples: 4

Max nTPM: 228.6
Min nTPM: 50.0
Sample A Female 133.1
Sample B Female 228.6
Sample C Male 50.0
Sample D Male 56.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.4
Sample A Male 28.2
Sample B Male 22.4
Sample C Female 24.2
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69782061 Antisense, RP_050505_02_C04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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