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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:64.0 nTPM
HPA:64.0 nTPM
GTEx:35.8 nTPM
FANTOM5:261.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA061700Antibody CAB004671
Glandular cells HighHigh


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 64.0
overview
Male, age 65
Small intestine sample 232
nTPM: 72.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 53.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 55.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 74.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 35.8
Samples: 187

Max nTPM: 106.1
Min nTPM: 4.9
Std nTPM: 23.7
Median nTPM: 30.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 106.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 105.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 97.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 91.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 90.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 84.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 83.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 83.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 81.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 80.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 80.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 80.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 79.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 79.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 79.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 78.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 77.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 77.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 77.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 77.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 76.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 72.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 69.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 69.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 69.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 69.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 67.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 66.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 65.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 62.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 62.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 62.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 60.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 58.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 57.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 56.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 55.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 53.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 52.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 52.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 52.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 51.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 50.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 50.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 49.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 49.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 48.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 48.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 47.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 47.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 47.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 47.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 46.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 45.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 44.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 44.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 43.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 43.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 42.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 42.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 42.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 41.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 41.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 41.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 40.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 40.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 40.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 39.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 39.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 38.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 38.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 38.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 37.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 37.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 36.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 36.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 36.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 36.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 36.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 36.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 34.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 34.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 33.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 33.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 33.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 33.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 32.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 32.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 31.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 31.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 31.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 31.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 31.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 30.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 30.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 30.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 29.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 28.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 28.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 28.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 27.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 27.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 27.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 27.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 26.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 25.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 24.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 24.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 24.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 24.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 23.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 23.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 22.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 22.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 22.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 21.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 21.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 21.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 21.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 20.9
GTEX-1192X-2526-SM-59868 50-59 years, male 20.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 20.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 20.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 20.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 19.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 19.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 19.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 19.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 18.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 18.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 18.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 18.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 17.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 17.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 17.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 17.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 17.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 17.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 16.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 16.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 16.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 16.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 16.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 16.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 16.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 16.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 16.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 16.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 15.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 15.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 15.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 15.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 15.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 15.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 15.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 15.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 14.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 13.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 13.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 13.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 12.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 11.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 11.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 10.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 10.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 9.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 9.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 8.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 8.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 8.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 8.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 7.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 7.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 6.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 6.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 6.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 4.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 261.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 261.8
FF:10024-101D6 15,40,85 years, mixed 261.8

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