MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:68.7 nTPM
FANTOM5:201.3 Scaled Tags Per Million
Pig:68.1 nTPM
Mouse:21.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
1830 Male, age 51, unknown 34.7
2828 Female, age 72, unknown 33.0
2666 Male, age 74, left hemisphere 32.9
1833 Male, age 53, unknown 32.5
2019 Male, age 18, unknown 32.2
1870 Female, age 42, unknown 31.5
1827 Male, age 72, unknown 31.0
2411 Female, age 72, unknown 30.6
2219 Male, age 76, both hemispheres 29.7
2586 Male, age 75, left hemisphere 28.6
Dorsal raphe nucleus
nTPM: 33.2
2298 Female, age 72, unknown 34.8
2016 Female, age 72, unknown 33.9
1828 Male, age 53, unknown 33.2
2750 Male, age 76, both hemispheres 32.6
2047 Male, age 72, unknown 31.7
Inferior colliculus
nTPM: 32.2
2849 Male, age 72, unknown 33.1
1890 Male, age 53, unknown 32.3
2097 Female, age 72, unknown 31.9
1848 Female, age 42, unknown 31.6
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Pedunculopontine tegmental nucleus
nTPM: 48.7
2338 Male, age 61, both hemispheres 76.7
2334 Male, age 80, both hemispheres 38.9
1921 Female, age 85, both hemispheres 30.4
Periaquaductal grey, anterior
nTPM: 31.2
1947 Male, age 18, unknown 32.3
1795 Male, age 51, unknown 31.7
2502 Female, age 75, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 36.2
2850 Male, age 76, both hemispheres 44.4
1831 Male, age 72, unknown 36.5
1840 Male, age 53, unknown 32.1
2464 Female, age 72, unknown 31.7
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 38.4
2140 Male, age 76, both hemispheres 38.1
2053 Male, age 18, unknown 33.8
Pretectal area
nTPM: 33.0
2224 Female, age 72, unknown 35.8
2273 Male, age 74, both hemispheres 34.9
2407 Male, age 75, both hemispheres 34.3
1944 Female, age 72, unknown 34.1
1817 Female, age 42, unknown 33.3
2316 Male, age 76, right hemisphere 33.0
2007 Male, age 72, unknown 32.6
1815 Male, age 53, unknown 32.3
2825 Male, age 18, unknown 31.6
2667 Female, age 75, unknown 31.5
1816 Male, age 51, unknown 30.2
Red nucleus
nTPM: 33.5
2725 Female, age 75, unknown 38.4
1865 Male, age 51, unknown 36.5
2503 Female, age 72, unknown 35.5
2823 Male, age 76, right hemisphere 34.8
1904 Male, age 53, unknown 33.6
2785 Male, age 18, unknown 33.5
2769 Male, age 72, unknown 32.6
1821 Female, age 72, unknown 32.5
2227 Male, age 72, unknown 32.1
1954 Female, age 42, unknown 31.8
2584 Male, age 75, left hemisphere 31.6
2588 Male, age 74, left hemisphere 29.2
Substantia nigra
nTPM: 35.3
2699 Male, age 18, unknown 39.6
2590 Female, age 75, unknown 39.1
2665 Male, age 74, both hemispheres 39.1
1941 Male, age 53, unknown 34.9
1851 Male, age 51, unknown 34.4
2241 Male, age 72, unknown 34.2
2583 Male, age 75, right hemisphere 34.2
2409 Female, age 72, unknown 33.8
1916 Female, age 42, unknown 33.1
1889 Female, age 72, unknown 30.9
Superior colliculus
nTPM: 33.3
1913 Female, age 42, unknown 39.5
2587 Male, age 74, left hemisphere 38.2
1995 Male, age 72, unknown 36.0
2087 Female, age 72, unknown 32.4
1796 Male, age 53, unknown 32.0
1839 Male, age 51, unknown 31.4
1895 Male, age 76, right hemisphere 31.4
2261 Male, age 18, unknown 30.9
2664 Male, age 75, both hemispheres 30.5
2668 Female, age 75, unknown 30.3
Ventral tegmental area
nTPM: 36.4
2021 Male, age 53, unknown 40.4
2218 Male, age 76, both hemispheres 39.3
1915 Female, age 42, unknown 35.7
2223 Female, age 72, unknown 34.7
1942 Male, age 51, unknown 34.3
2410 Female, age 72, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.7
Samples: 139

Max nTPM: 277.9
Min nTPM: 4.5
Std nTPM: 58.2
Median nTPM: 48.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 277.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 245.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 243.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 234.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 227.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 225.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 225.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 213.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 207.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 171.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 170.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.3
FF:10158-103A5 76 years, female 201.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.1
Pig sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 19.8
Sample A Female 60.9
Sample B Female 61.1
Sample C Male 19.8
Sample D Male 28.0
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 90.4
Min nTPM: 55.4
Sample B Female 55.4
Sample C Male 90.4
Sample D Male 58.6
Substantia nigra
nTPM: 55.9
Samples: 4

Max nTPM: 66.9
Min nTPM: 46.8
Sample A Female 46.8
Sample B Female 57.3
Sample C Male 66.9
Sample D Male 52.4
Superior colliculi
nTPM: 33.5
Samples: 4

Max nTPM: 43.4
Min nTPM: 17.9
Sample A Female 43.4
Sample B Female 17.9
Sample C Male 33.6
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.9
Sample A Male 24.8
Sample B Male 18.9
Sample C Female 19.7
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100144165 Antisense, RP_110421_02_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.