MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:43.6 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:38.2 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2586 Male, age 75, left hemisphere 36.3
2019 Male, age 18, unknown 29.9
2828 Female, age 72, unknown 27.3
2666 Male, age 74, left hemisphere 23.6
1827 Male, age 72, unknown 23.2
2219 Male, age 76, both hemispheres 21.6
2411 Female, age 72, unknown 21.4
1870 Female, age 42, unknown 18.5
1833 Male, age 53, unknown 17.8
1830 Male, age 51, unknown 16.8
Dorsal raphe nucleus
nTPM: 23.1
2298 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 23.4
1828 Male, age 53, unknown 23.2
2750 Male, age 76, both hemispheres 21.2
2016 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 20.5
2097 Female, age 72, unknown 23.9
1890 Male, age 53, unknown 22.5
1848 Female, age 42, unknown 19.0
2849 Male, age 72, unknown 16.4
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Pedunculopontine tegmental nucleus
nTPM: 20.9
2334 Male, age 80, both hemispheres 23.5
1921 Female, age 85, both hemispheres 22.4
2338 Male, age 61, both hemispheres 16.7
Periaquaductal grey, anterior
nTPM: 27.2
1795 Male, age 51, unknown 29.6
2502 Female, age 75, unknown 26.7
1947 Male, age 18, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 17.4
2464 Female, age 72, unknown 21.0
1840 Male, age 53, unknown 18.1
1831 Male, age 72, unknown 17.5
2850 Male, age 76, both hemispheres 12.8
Periaquaductal grey, lateral
nTPM: 17.3
2272 Male, age 74, both hemispheres 19.4
2053 Male, age 18, unknown 16.5
2140 Male, age 76, both hemispheres 15.9
Pretectal area
nTPM: 26.3
2007 Male, age 72, unknown 36.5
1816 Male, age 51, unknown 35.6
1944 Female, age 72, unknown 35.2
1817 Female, age 42, unknown 34.3
1815 Male, age 53, unknown 27.8
2667 Female, age 75, unknown 22.3
2273 Male, age 74, both hemispheres 20.3
2407 Male, age 75, both hemispheres 20.1
2224 Female, age 72, unknown 19.8
2316 Male, age 76, right hemisphere 19.7
2825 Male, age 18, unknown 17.7
Red nucleus
nTPM: 22.1
2785 Male, age 18, unknown 30.5
2588 Male, age 74, left hemisphere 27.2
2503 Female, age 72, unknown 24.9
2584 Male, age 75, left hemisphere 22.5
2227 Male, age 72, unknown 22.4
2769 Male, age 72, unknown 22.3
1904 Male, age 53, unknown 20.8
1821 Female, age 72, unknown 20.1
2725 Female, age 75, unknown 20.0
1954 Female, age 42, unknown 19.9
1865 Male, age 51, unknown 17.3
2823 Male, age 76, right hemisphere 17.2
Substantia nigra
nTPM: 27.0
1916 Female, age 42, unknown 36.3
2665 Male, age 74, both hemispheres 35.0
1851 Male, age 51, unknown 32.6
1889 Female, age 72, unknown 30.9
1941 Male, age 53, unknown 27.1
2583 Male, age 75, right hemisphere 26.7
2590 Female, age 75, unknown 22.9
2241 Male, age 72, unknown 21.9
2699 Male, age 18, unknown 19.7
2409 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 24.7
2668 Female, age 75, unknown 34.3
2087 Female, age 72, unknown 31.1
2261 Male, age 18, unknown 28.3
2664 Male, age 75, both hemispheres 26.1
1796 Male, age 53, unknown 26.0
1995 Male, age 72, unknown 22.1
1913 Female, age 42, unknown 21.3
2587 Male, age 74, left hemisphere 20.9
1839 Male, age 51, unknown 19.9
1895 Male, age 76, right hemisphere 16.8
Ventral tegmental area
nTPM: 24.6
2410 Female, age 72, unknown 29.2
1915 Female, age 42, unknown 28.8
1942 Male, age 51, unknown 27.0
2021 Male, age 53, unknown 22.0
2218 Male, age 76, both hemispheres 21.6
2223 Female, age 72, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.6
Samples: 139

Max nTPM: 102.3
Min nTPM: 15.9
Std nTPM: 14.3
Median nTPM: 40.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 102.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 80.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 70.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 70.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 70.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 69.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 68.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 67.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 66.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.5
FF:10158-103A5 76 years, female 23.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.8
Pig sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 23.5
Min nTPM: 13.8
Sample A Female 23.5
Sample B Female 13.8
Sample C Male 19.7
Sample D Male 14.2
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 14.8
Min nTPM: 11.4
Sample B Female 14.3
Sample C Male 14.8
Sample D Male 11.4
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 21.5
Min nTPM: 14.0
Sample A Female 21.5
Sample B Female 14.4
Sample C Male 17.1
Sample D Male 14.0
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 19.8
Min nTPM: 15.3
Sample A Female 19.8
Sample B Female 15.3
Sample C Male 16.5
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 41.5
Min nTPM: 35.6
Sample A Male 41.5
Sample B Male 36.8
Sample C Female 35.6
Sample D Female 38.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
393240 Antisense, RP_040804_02_G09, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.