MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:30.8 nTPM
FANTOM5:56.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2219 Male, age 76, both hemispheres 29.4
1870 Female, age 42, unknown 29.2
1833 Male, age 53, unknown 28.6
1827 Male, age 72, unknown 28.4
2828 Female, age 72, unknown 28.3
2411 Female, age 72, unknown 28.1
1830 Male, age 51, unknown 27.9
2019 Male, age 18, unknown 27.2
2666 Male, age 74, left hemisphere 27.1
2586 Male, age 75, left hemisphere 27.0
Dorsal raphe nucleus
nTPM: 28.9
2016 Female, age 72, unknown 29.8
2298 Female, age 72, unknown 29.7
1828 Male, age 53, unknown 29.3
2047 Male, age 72, unknown 28.3
2750 Male, age 76, both hemispheres 27.5
Inferior colliculus
nTPM: 29.1
2849 Male, age 72, unknown 30.8
1848 Female, age 42, unknown 29.1
2097 Female, age 72, unknown 28.5
1890 Male, age 53, unknown 28.1
Median raphe nucleus
nTPM: 29.3
2220 Male, age 76, midline 29.3
Pedunculopontine tegmental nucleus
nTPM: 29.1
1921 Female, age 85, both hemispheres 30.1
2338 Male, age 61, both hemispheres 29.1
2334 Male, age 80, both hemispheres 28.3
Periaquaductal grey, anterior
nTPM: 28.6
1795 Male, age 51, unknown 29.2
1947 Male, age 18, unknown 28.5
2502 Female, age 75, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 30.7
2850 Male, age 76, both hemispheres 35.4
1831 Male, age 72, unknown 29.9
1840 Male, age 53, unknown 28.8
2464 Female, age 72, unknown 28.8
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 32.2
2140 Male, age 76, both hemispheres 32.1
2053 Male, age 18, unknown 29.2
Pretectal area
nTPM: 28.7
2273 Male, age 74, both hemispheres 31.8
2407 Male, age 75, both hemispheres 30.4
2224 Female, age 72, unknown 29.8
2825 Male, age 18, unknown 29.0
2667 Female, age 75, unknown 28.8
1816 Male, age 51, unknown 28.4
1815 Male, age 53, unknown 27.6
1944 Female, age 72, unknown 27.6
2007 Male, age 72, unknown 27.4
2316 Male, age 76, right hemisphere 27.3
1817 Female, age 42, unknown 27.2
Red nucleus
nTPM: 27.6
1904 Male, age 53, unknown 29.1
2769 Male, age 72, unknown 28.4
2584 Male, age 75, left hemisphere 28.0
1821 Female, age 72, unknown 27.9
1954 Female, age 42, unknown 27.9
1865 Male, age 51, unknown 27.7
2227 Male, age 72, unknown 27.5
2785 Male, age 18, unknown 27.5
2725 Female, age 75, unknown 27.1
2823 Male, age 76, right hemisphere 27.0
2503 Female, age 72, unknown 26.8
2588 Male, age 74, left hemisphere 26.7
Substantia nigra
nTPM: 27.7
2590 Female, age 75, unknown 29.2
2699 Male, age 18, unknown 28.9
1941 Male, age 53, unknown 28.1
1916 Female, age 42, unknown 27.9
1889 Female, age 72, unknown 27.8
2583 Male, age 75, right hemisphere 27.6
1851 Male, age 51, unknown 27.5
2241 Male, age 72, unknown 27.1
2409 Female, age 72, unknown 26.4
2665 Male, age 74, both hemispheres 26.4
Superior colliculus
nTPM: 28.4
2261 Male, age 18, unknown 29.4
2587 Male, age 74, left hemisphere 29.3
1895 Male, age 76, right hemisphere 29.2
1995 Male, age 72, unknown 28.7
1839 Male, age 51, unknown 28.4
1796 Male, age 53, unknown 28.3
2664 Male, age 75, both hemispheres 27.9
2668 Female, age 75, unknown 27.7
2087 Female, age 72, unknown 27.5
1913 Female, age 42, unknown 27.4
Ventral tegmental area
nTPM: 27.9
2021 Male, age 53, unknown 28.3
2223 Female, age 72, unknown 28.3
1915 Female, age 42, unknown 28.2
2218 Male, age 76, both hemispheres 27.7
1942 Male, age 51, unknown 27.6
2410 Female, age 72, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 55.7
Min nTPM: 20.1
Std nTPM: 5.4
Median nTPM: 29.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 55.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 50.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 43.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 42.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 41.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 41.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 40.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 40.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 40.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.0
FF:10158-103A5 76 years, female 56.0

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The Human Protein Atlas

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