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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:213.2 nTPM
HPA:213.2 nTPM
GTEx:146.2 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:115.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 213.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 209.8
1981 Female, age 72, midline 219.0
2565 Male, age 75, midline 214.6
2194 Female, age 79, both hemispheres 210.7
2816 Male, age 47, midline 203.7
2048 Male, age 55, midline 200.8
Cervical spinal cord, dorsal horn
nTPM: 213.2
2173 Female, age 72, unknown 219.7
2069 Male, age 47, both hemispheres 218.3
2296 Male, age 66, both hemispheres 214.3
2721 Male, age 90, both hemispheres 209.4
1877 Male, age 55, unknown 209.0
2297 Male, age 75, both hemispheres 208.3
Cervical spinal cord, ventral horn
nTPM: 208.8
2098 Female, age 72, unknown 211.3
2480 Male, age 75, both hemispheres 211.3
2068 Male, age 55, unknown 209.6
2295 Male, age 66, both hemispheres 208.9
2820 Female, age 79, both hemispheres 206.3
2809 Male, age 90, both hemispheres 205.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 146.2
Samples: 159

Max nTPM: 236.0
Min nTPM: 66.4
Std nTPM: 30.0
Median nTPM: 145.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 236.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 219.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 217.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 209.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 206.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 206.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 205.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 204.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 203.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 203.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 198.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 192.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 191.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 188.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 187.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 185.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 184.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 183.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 182.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 180.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 179.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 179.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 178.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 178.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 177.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 177.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 177.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 176.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 174.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 172.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 171.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 168.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 167.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 167.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 165.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 165.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 165.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 164.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 163.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 162.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 161.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 159.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 159.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 159.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 158.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 158.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 157.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 157.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 156.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 156.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 156.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 153.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 153.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 152.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 152.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 151.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 151.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 151.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 150.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 150.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 150.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 150.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 149.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 149.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 149.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 148.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 147.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 147.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 147.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 147.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 147.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 146.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 145.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 144.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 143.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 143.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 142.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 142.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 141.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 141.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 140.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 140.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 139.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 138.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 137.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 136.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 136.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 136.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 135.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 134.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 133.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 133.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 132.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 132.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 132.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 131.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 130.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 129.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 129.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 127.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 127.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 123.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 121.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 121.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 120.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 119.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 119.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 116.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 115.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 114.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 114.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 113.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 113.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 111.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 110.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 109.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 109.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 102.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 100.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 99.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 98.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 97.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 96.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 93.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 92.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 86.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 66.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 18.0
FF:10181-103D1 60 years, female 25.1
FF:10159-103A6 76 years, female 10.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 94.5
Samples: 4

Max nTPM: 107.7
Min nTPM: 74.6
Sample A Female 103.7
Sample B Female 74.6
Sample C Male 92.1
Sample D Male 107.7
Ventral spinal cord
nTPM: 115.0
Samples: 4

Max nTPM: 132.7
Min nTPM: 99.5
Sample A Female 99.5
Sample B Female 122.9
Sample C Male 132.7
Sample D Male 104.9

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