BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:29.8 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:39.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027515
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.2
2289 Male, age 61, right hemisphere 24.8
1857 Female, age 85, left hemisphere 23.8
1854 Male, age 80, left hemisphere 23.2
2288 Male, age 75, left hemisphere 23.2
2290 Female, age 72, unknown 23.0
2846 Female, age 79, unknown 22.8
2481 Female, age 94, left hemisphere 19.8
1781 Male, age 74, unknown 17.2
Claustrum
nTPM: 15.2
2198 Male, age 80, both hemispheres 16.7
2568 Male, age 61, both hemispheres 16.7
2284 Female, age 91, both hemispheres 16.5
2196 Female, age 79, unknown 15.8
2645 Female, age 72, unknown 15.1
1956 Male, age 74, unknown 14.9
2392 Female, age 94, both hemispheres 14.5
2292 Female, age 85, both hemispheres 13.2
2491 Male, age 75, both hemispheres 13.1
Globus pallidus, externus
nTPM: 13.6
1996 Male, age 80, right hemisphere 14.1
2646 Male, age 61, right hemisphere 13.9
2567 Female, age 72, unknown 13.5
2395 Male, age 75, both hemispheres 13.3
2772 Female, age 79, unknown 13.2
Globus pallidus, internus
nTPM: 13.6
2483 Female, age 94, right hemisphere 15.7
2037 Male, age 80, right hemisphere 14.8
1818 Male, age 74, unknown 14.3
2287 Male, age 75, right hemisphere 13.7
2566 Female, age 72, unknown 13.2
2778 Female, age 91, both hemispheres 12.1
2111 Female, age 85, right hemisphere 11.2
Nucleus accumbens
nTPM: 19.1
1856 Female, age 91, right hemisphere 24.2
2286 Male, age 75, left hemisphere 21.0
1806 Female, age 85, left hemisphere 20.7
1783 Male, age 74, unknown 18.8
2824 Male, age 61, right hemisphere 18.6
2698 Female, age 72, unknown 18.2
2391 Female, age 94, left hemisphere 16.9
2732 Male, age 80, right hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 17.5
2393 Male, age 80, right hemisphere 20.7
2484 Female, age 94, left hemisphere 18.7
2821 Male, age 75, both hemispheres 17.0
2569 Male, age 61, both hemispheres 13.7
Nucleus of the diagonal band
nTPM: 15.2
1979 Male, age 74, unknown 17.2
2195 Female, age 85, both hemispheres 15.9
1812 Female, age 91, both hemispheres 15.8
2775 Male, age 80, right hemisphere 13.9
2029 Male, age 61, right hemisphere 13.2
Olfactory tubercle
nTPM: 14.7
1846 Male, age 80, right hemisphere 15.4
1998 Female, age 91, both hemispheres 15.3
2856 Male, age 75, right hemisphere 14.7
2487 Female, age 94, left hemisphere 13.3
Putamen
nTPM: 20.7
1838 Male, age 80, right hemisphere 25.4
1937 Female, age 91, right hemisphere 23.8
2466 Female, age 79, unknown 21.1
2647 Male, age 75, left hemisphere 19.7
1829 Male, age 74, unknown 19.3
2489 Female, age 72, unknown 18.3
2482 Female, age 94, left hemisphere 17.4
Septal nuclei
nTPM: 15.1
2629 Female, age 94, right hemisphere 16.6
2009 Female, age 91, both hemispheres 15.4
1960 Male, age 74, unknown 15.3
2059 Female, age 85, both hemispheres 15.2
2031 Female, age 72, unknown 15.1
2199 Male, age 80, right hemisphere 14.1
2394 Male, age 61, left hemisphere 14.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 164.0
Min nTPM: 5.5
Std nTPM: 15.1
Median nTPM: 29.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 164.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 85.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 70.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 59.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 59.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 58.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 57.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 56.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 53.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 52.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.0
Samples: 246

Max nTPM: 79.6
Min nTPM: 5.8
Std nTPM: 12.0
Median nTPM: 23.1
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 79.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 79.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 69.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 67.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 65.5
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 64.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 62.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 54.3
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 49.8
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 46.0
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 46.0
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Brain - Putamen (basal ganglia)
Average nTPM: 27.8
Samples: 205

Max nTPM: 127.8
Min nTPM: 6.1
Std nTPM: 15.5
Median nTPM: 25.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 127.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 92.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 82.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 81.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 64.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 60.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 56.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 52.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 52.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 49.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.7
FF:10164-103B2 76 years, female 21.7
Globus pallidus
Scaled Tags Per Million: 7.2
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 4.3
Nucleus accumbens
Scaled Tags Per Million: 25.9
FF:10037-101F1 23-56 years, mixed 25.9
Putamen
Scaled Tags Per Million: 23.8
FF:10176-103C5 60 years, female 23.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Caudate
nTPM: 14.4
Samples: 4

Max nTPM: 21.4
Min nTPM: 10.5
Sample A Female 12.6
Sample B Female 10.5
Sample C Male 21.4
Sample D Male 13.0
Putamen
nTPM: 12.6
Samples: 4

Max nTPM: 19.1
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.7
Sample C Male 19.1
Sample D Male 16.7
Septum
nTPM: 8.6
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.3
Sample A Female 9.6
Sample B Female 9.8
Sample C Male 7.3
Sample D Male 7.7
Ventral pallidum
nTPM: 10.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.3
Sample A Female 10.2
Sample B Female 11.5
Sample C Male 9.3
Sample D Male 11.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.4
Samples: 4

Max nTPM: 51.5
Min nTPM: 32.7
Sample A Male 51.5
Sample B Male 36.2
Sample C Female 32.7
Sample D Female 37.3
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 21.7
Min nTPM: 13.9
Sample A Male 20.4
Sample B Male 21.7
Sample C Female 13.9
Sample D Female 15.9
Ventral forebrain
nTPM: 27.7
Samples: 4

Max nTPM: 34.9
Min nTPM: 23.7
Sample A Male 34.9
Sample B Male 23.7
Sample C Female 26.2
Sample D Female 25.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70785840 Antisense, RP_050706_02_G07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
70785840 Antisense, RP_050706_02_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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