MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:175.1 nTPM
HPA:175.1 nTPM
GTEx:189.0 nTPM
FANTOM5:582.5 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:0.0 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 175.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.0
1870 Female, age 42, unknown 174.2
2411 Female, age 72, unknown 170.0
1833 Male, age 53, unknown 168.2
1830 Male, age 51, unknown 163.3
2019 Male, age 18, unknown 161.2
2828 Female, age 72, unknown 156.5
1827 Male, age 72, unknown 141.7
2219 Male, age 76, both hemispheres 141.5
2666 Male, age 74, left hemisphere 128.5
2586 Male, age 75, left hemisphere 125.2
Dorsal raphe nucleus
nTPM: 147.3
2750 Male, age 76, both hemispheres 171.5
2016 Female, age 72, unknown 150.3
2298 Female, age 72, unknown 143.2
1828 Male, age 53, unknown 140.6
2047 Male, age 72, unknown 131.1
Inferior colliculus
nTPM: 140.8
1848 Female, age 42, unknown 144.7
2097 Female, age 72, unknown 141.1
2849 Male, age 72, unknown 140.0
1890 Male, age 53, unknown 137.3
Median raphe nucleus
nTPM: 132.5
2220 Male, age 76, midline 132.5
Pedunculopontine tegmental nucleus
nTPM: 154.5
2334 Male, age 80, both hemispheres 157.5
2338 Male, age 61, both hemispheres 157.4
1921 Female, age 85, both hemispheres 148.6
Periaquaductal grey, anterior
nTPM: 132.3
1947 Male, age 18, unknown 135.6
2502 Female, age 75, unknown 131.8
1795 Male, age 51, unknown 129.7
Periaquaductal grey, dorsal
nTPM: 131.8
2464 Female, age 72, unknown 144.5
1831 Male, age 72, unknown 130.4
2850 Male, age 76, both hemispheres 127.4
1840 Male, age 53, unknown 125.1
Periaquaductal grey, lateral
nTPM: 137.3
2272 Male, age 74, both hemispheres 150.4
2053 Male, age 18, unknown 135.8
2140 Male, age 76, both hemispheres 125.6
Pretectal area
nTPM: 144.1
2667 Female, age 75, unknown 166.4
2273 Male, age 74, both hemispheres 154.9
2316 Male, age 76, right hemisphere 151.4
1815 Male, age 53, unknown 150.9
1817 Female, age 42, unknown 145.9
2407 Male, age 75, both hemispheres 143.3
2224 Female, age 72, unknown 143.2
2825 Male, age 18, unknown 139.4
2007 Male, age 72, unknown 136.5
1944 Female, age 72, unknown 129.6
1816 Male, age 51, unknown 123.7
Red nucleus
nTPM: 175.1
1904 Male, age 53, unknown 196.6
2823 Male, age 76, right hemisphere 195.0
1865 Male, age 51, unknown 186.1
1954 Female, age 42, unknown 185.9
2227 Male, age 72, unknown 184.9
2769 Male, age 72, unknown 184.8
1821 Female, age 72, unknown 184.4
2503 Female, age 72, unknown 181.2
2785 Male, age 18, unknown 175.9
2725 Female, age 75, unknown 152.9
2588 Male, age 74, left hemisphere 142.8
2584 Male, age 75, left hemisphere 130.7
Substantia nigra
nTPM: 143.0
1851 Male, age 51, unknown 156.4
2699 Male, age 18, unknown 152.2
2409 Female, age 72, unknown 150.5
1889 Female, age 72, unknown 149.2
2583 Male, age 75, right hemisphere 145.9
2590 Female, age 75, unknown 143.5
1916 Female, age 42, unknown 140.3
2241 Male, age 72, unknown 136.6
1941 Male, age 53, unknown 135.4
2665 Male, age 74, both hemispheres 119.7
Superior colliculus
nTPM: 148.3
1995 Male, age 72, unknown 176.0
1913 Female, age 42, unknown 175.5
1895 Male, age 76, right hemisphere 167.3
2587 Male, age 74, left hemisphere 153.3
1839 Male, age 51, unknown 145.5
1796 Male, age 53, unknown 142.3
2668 Female, age 75, unknown 139.1
2087 Female, age 72, unknown 135.6
2261 Male, age 18, unknown 127.5
2664 Male, age 75, both hemispheres 120.9
Ventral tegmental area
nTPM: 148.6
2410 Female, age 72, unknown 161.2
2223 Female, age 72, unknown 156.8
1915 Female, age 42, unknown 148.8
1942 Male, age 51, unknown 143.3
2218 Male, age 76, both hemispheres 141.2
2021 Male, age 53, unknown 140.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 189.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 189.0
Samples: 139

Max nTPM: 509.7
Min nTPM: 63.5
Std nTPM: 76.8
Median nTPM: 166.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 509.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 458.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 443.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 391.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 370.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 367.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 356.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 353.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 339.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 329.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 317.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 582.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 582.5
FF:10158-103A5 76 years, female 582.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 72.3
Min nTPM: 21.8
Sample A Female 72.3
Sample B Female 27.1
Sample C Male 21.8
Sample D Male 24.1
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 25.3
Min nTPM: 21.4
Sample B Female 25.3
Sample C Male 21.4
Sample D Male 25.0
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 39.5
Min nTPM: 19.4
Sample A Female 37.3
Sample B Female 19.4
Sample C Male 23.7
Sample D Male 39.5
Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 41.8
Min nTPM: 30.2
Sample A Female 41.8
Sample B Female 30.2
Sample C Male 33.0
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.4
Samples: 4

Max nTPM: 78.3
Min nTPM: 62.9
Sample A Male 78.3
Sample B Male 71.0
Sample C Female 62.9
Sample D Female 73.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 2.9
Midbrain
Expression energy: 2.9
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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