BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.1 nTPM
HPA:60.1 nTPM
GTEx:53.7 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:62.5 nTPM
Allen mouse:2.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 58.7
2846 Female, age 79, unknown 63.6
1857 Female, age 85, left hemisphere 62.7
2290 Female, age 72, unknown 59.5
1781 Male, age 74, unknown 58.6
1854 Male, age 80, left hemisphere 57.5
2288 Male, age 75, left hemisphere 56.4
2481 Female, age 94, left hemisphere 56.4
2289 Male, age 61, right hemisphere 54.4
Claustrum
nTPM: 54.7
2196 Female, age 79, unknown 57.9
1956 Male, age 74, unknown 56.6
2292 Female, age 85, both hemispheres 56.6
2198 Male, age 80, both hemispheres 55.8
2392 Female, age 94, both hemispheres 54.2
2568 Male, age 61, both hemispheres 54.0
2491 Male, age 75, both hemispheres 53.8
2645 Female, age 72, unknown 51.8
2284 Female, age 91, both hemispheres 51.6
Globus pallidus, externus
nTPM: 59.7
2395 Male, age 75, both hemispheres 62.4
2772 Female, age 79, unknown 61.3
1996 Male, age 80, right hemisphere 61.1
2646 Male, age 61, right hemisphere 58.2
2567 Female, age 72, unknown 55.6
Globus pallidus, internus
nTPM: 60.1
2287 Male, age 75, right hemisphere 64.5
2778 Female, age 91, both hemispheres 62.8
2483 Female, age 94, right hemisphere 59.5
2037 Male, age 80, right hemisphere 59.2
1818 Male, age 74, unknown 58.8
2111 Female, age 85, right hemisphere 58.8
2566 Female, age 72, unknown 57.0
Nucleus accumbens
nTPM: 58.6
1806 Female, age 85, left hemisphere 61.8
1783 Male, age 74, unknown 60.4
2286 Male, age 75, left hemisphere 60.3
2698 Female, age 72, unknown 59.7
1856 Female, age 91, right hemisphere 59.2
2824 Male, age 61, right hemisphere 59.1
2391 Female, age 94, left hemisphere 55.1
2732 Male, age 80, right hemisphere 53.3
Nucleus basalis of Meynert
nTPM: 56.1
2569 Male, age 61, both hemispheres 58.8
2393 Male, age 80, right hemisphere 55.5
2821 Male, age 75, both hemispheres 55.3
2484 Female, age 94, left hemisphere 54.9
Nucleus of the diagonal band
nTPM: 55.7
1812 Female, age 91, both hemispheres 57.1
2195 Female, age 85, both hemispheres 56.6
2775 Male, age 80, right hemisphere 56.0
2029 Male, age 61, right hemisphere 54.7
1979 Male, age 74, unknown 54.0
Olfactory tubercle
nTPM: 54.0
1846 Male, age 80, right hemisphere 58.4
2487 Female, age 94, left hemisphere 53.7
2856 Male, age 75, right hemisphere 52.3
1998 Female, age 91, both hemispheres 51.7
Putamen
nTPM: 58.1
2466 Female, age 79, unknown 61.8
1838 Male, age 80, right hemisphere 59.9
1829 Male, age 74, unknown 58.5
2482 Female, age 94, left hemisphere 58.5
1937 Female, age 91, right hemisphere 57.6
2489 Female, age 72, unknown 55.9
2647 Male, age 75, left hemisphere 54.5
Septal nuclei
nTPM: 54.6
1960 Male, age 74, unknown 57.1
2629 Female, age 94, right hemisphere 56.0
2059 Female, age 85, both hemispheres 55.1
2394 Male, age 61, left hemisphere 53.8
2009 Female, age 91, both hemispheres 53.7
2031 Female, age 72, unknown 53.5
2199 Male, age 80, right hemisphere 53.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.3
Samples: 246

Max nTPM: 72.6
Min nTPM: 39.9
Std nTPM: 5.6
Median nTPM: 51.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 72.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 67.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 66.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 64.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 64.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 64.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 64.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 63.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 63.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.6
Samples: 246

Max nTPM: 82.2
Min nTPM: 37.3
Std nTPM: 6.9
Median nTPM: 52.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 82.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 78.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 77.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 76.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 76.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 75.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 69.1
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 67.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 64.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 64.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 64.2
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Brain - Putamen (basal ganglia)
Average nTPM: 53.7
Samples: 205

Max nTPM: 81.2
Min nTPM: 38.8
Std nTPM: 6.1
Median nTPM: 53.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 81.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 72.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 69.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 66.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 66.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 65.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 65.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 65.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 65.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 65.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 64.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.4
FF:10164-103B2 76 years, female 49.4
Globus pallidus
Scaled Tags Per Million: 57.1
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 55.8
Nucleus accumbens
Scaled Tags Per Million: 65.2
FF:10037-101F1 23-56 years, mixed 65.2
Putamen
Scaled Tags Per Million: 57.5
FF:10176-103C5 60 years, female 57.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.8
Pig sample Sample description nTPM
Caudate
nTPM: 49.3
Samples: 4

Max nTPM: 58.3
Min nTPM: 42.1
Sample A Female 42.1
Sample B Female 48.2
Sample C Male 58.3
Sample D Male 48.4
Putamen
nTPM: 55.9
Samples: 4

Max nTPM: 65.3
Min nTPM: 44.8
Sample A Female 51.4
Sample B Female 44.8
Sample C Male 65.3
Sample D Male 61.9
Septum
nTPM: 45.8
Samples: 4

Max nTPM: 49.9
Min nTPM: 43.3
Sample A Female 49.9
Sample B Female 43.3
Sample C Male 46.2
Sample D Male 43.6
Ventral pallidum
nTPM: 49.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 41.0
Sample A Female 41.0
Sample B Female 48.7
Sample C Male 52.8
Sample D Male 54.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 62.5
Samples: 4

Max nTPM: 65.3
Min nTPM: 58.7
Sample A Male 61.4
Sample B Male 65.3
Sample C Female 58.7
Sample D Female 64.6
Septum
nTPM: 54.8
Samples: 4

Max nTPM: 60.7
Min nTPM: 45.7
Sample A Male 45.7
Sample B Male 54.1
Sample C Female 60.7
Sample D Female 58.8
Ventral forebrain
nTPM: 56.5
Samples: 4

Max nTPM: 63.9
Min nTPM: 51.9
Sample A Male 51.9
Sample B Male 54.1
Sample C Female 63.9
Sample D Female 56.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
61210 Antisense, RP_040407_01_C01, Mouse strain C57BL/6J (56 days, male) 5.0
68203455 Antisense, RP_041208_01_A02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 2.8
61210 Antisense, RP_040407_01_C01, Mouse strain C57BL/6J (56 days, male) 5.1
68203455 Antisense, RP_041208_01_A02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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