MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.6 nTPM
HPA:58.6 nTPM
GTEx:48.4 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:61.0 nTPM
Mouse:46.8 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
1833 Male, age 53, unknown 60.0
1870 Female, age 42, unknown 59.9
2019 Male, age 18, unknown 58.8
2411 Female, age 72, unknown 58.3
2586 Male, age 75, left hemisphere 58.3
1830 Male, age 51, unknown 56.4
2828 Female, age 72, unknown 53.6
2666 Male, age 74, left hemisphere 53.5
1827 Male, age 72, unknown 53.4
2219 Male, age 76, both hemispheres 50.3
Dorsal raphe nucleus
nTPM: 55.5
2750 Male, age 76, both hemispheres 57.6
2298 Female, age 72, unknown 56.8
1828 Male, age 53, unknown 56.0
2016 Female, age 72, unknown 53.6
2047 Male, age 72, unknown 53.5
Inferior colliculus
nTPM: 55.5
2849 Male, age 72, unknown 56.7
1848 Female, age 42, unknown 56.0
1890 Male, age 53, unknown 54.7
2097 Female, age 72, unknown 54.6
Median raphe nucleus
nTPM: 55.3
2220 Male, age 76, midline 55.3
Pedunculopontine tegmental nucleus
nTPM: 55.7
2334 Male, age 80, both hemispheres 57.6
2338 Male, age 61, both hemispheres 56.6
1921 Female, age 85, both hemispheres 52.8
Periaquaductal grey, anterior
nTPM: 52.7
2502 Female, age 75, unknown 53.4
1795 Male, age 51, unknown 52.4
1947 Male, age 18, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 55.1
2850 Male, age 76, both hemispheres 58.3
1831 Male, age 72, unknown 54.5
1840 Male, age 53, unknown 53.8
2464 Female, age 72, unknown 53.7
Periaquaductal grey, lateral
nTPM: 55.3
2140 Male, age 76, both hemispheres 56.7
2053 Male, age 18, unknown 54.6
2272 Male, age 74, both hemispheres 54.6
Pretectal area
nTPM: 55.2
1817 Female, age 42, unknown 60.2
1815 Male, age 53, unknown 57.7
2007 Male, age 72, unknown 55.4
2407 Male, age 75, both hemispheres 55.3
1816 Male, age 51, unknown 55.0
2825 Male, age 18, unknown 54.7
2667 Female, age 75, unknown 54.3
1944 Female, age 72, unknown 53.8
2316 Male, age 76, right hemisphere 53.8
2273 Male, age 74, both hemispheres 53.6
2224 Female, age 72, unknown 53.2
Red nucleus
nTPM: 58.6
1821 Female, age 72, unknown 62.4
1904 Male, age 53, unknown 61.7
2785 Male, age 18, unknown 60.5
1954 Female, age 42, unknown 59.9
1865 Male, age 51, unknown 59.7
2227 Male, age 72, unknown 59.4
2769 Male, age 72, unknown 59.1
2588 Male, age 74, left hemisphere 57.3
2823 Male, age 76, right hemisphere 56.5
2503 Female, age 72, unknown 56.0
2584 Male, age 75, left hemisphere 55.8
2725 Female, age 75, unknown 55.4
Substantia nigra
nTPM: 56.0
2409 Female, age 72, unknown 59.8
2583 Male, age 75, right hemisphere 59.4
2590 Female, age 75, unknown 57.0
1889 Female, age 72, unknown 56.6
1851 Male, age 51, unknown 56.5
2241 Male, age 72, unknown 55.7
2665 Male, age 74, both hemispheres 54.8
1916 Female, age 42, unknown 54.1
2699 Male, age 18, unknown 53.8
1941 Male, age 53, unknown 52.1
Superior colliculus
nTPM: 56.3
1995 Male, age 72, unknown 59.3
1839 Male, age 51, unknown 58.8
1913 Female, age 42, unknown 58.5
2668 Female, age 75, unknown 58.4
2587 Male, age 74, left hemisphere 56.3
2261 Male, age 18, unknown 55.6
2087 Female, age 72, unknown 54.5
2664 Male, age 75, both hemispheres 54.4
1796 Male, age 53, unknown 54.3
1895 Male, age 76, right hemisphere 53.2
Ventral tegmental area
nTPM: 56.9
2223 Female, age 72, unknown 62.1
2410 Female, age 72, unknown 60.2
2218 Male, age 76, both hemispheres 56.2
2021 Male, age 53, unknown 55.4
1915 Female, age 42, unknown 54.6
1942 Male, age 51, unknown 53.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.4
Samples: 139

Max nTPM: 79.1
Min nTPM: 34.1
Std nTPM: 9.3
Median nTPM: 47.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 79.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 72.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 72.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 69.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 65.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.2
FF:10158-103A5 76 years, female 49.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.0
Pig sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 77.7
Min nTPM: 43.8
Sample A Female 77.7
Sample B Female 43.8
Sample C Male 70.7
Sample D Male 51.7
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 43.4
Min nTPM: 38.6
Sample B Female 40.1
Sample C Male 43.4
Sample D Male 38.6
Substantia nigra
nTPM: 50.3
Samples: 4

Max nTPM: 60.6
Min nTPM: 39.2
Sample A Female 60.6
Sample B Female 39.2
Sample C Male 50.6
Sample D Male 50.9
Superior colliculi
nTPM: 58.9
Samples: 4

Max nTPM: 65.3
Min nTPM: 49.2
Sample A Female 63.2
Sample B Female 49.2
Sample C Male 65.3
Sample D Male 57.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 49.3
Min nTPM: 44.9
Sample A Male 46.0
Sample B Male 44.9
Sample C Female 46.8
Sample D Female 49.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
61210 Antisense, RP_040407_01_C01, Mouse strain C57BL/6J (56 days, male) 8.0
68203455 Antisense, RP_041208_01_A02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.