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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:200.2 nTPM
HPA:200.2 nTPM
GTEx:176.6 nTPM
FANTOM5:66.4 Scaled Tags Per Million
Pig:53.0 nTPM
Mouse:142.3 nTPM
Allen mouse:11.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 200.2
Sample id Sample description nTPM
Amygdala
nTPM: 200.2
2814 Male, age 76, right hemisphere 209.0
2514 Male, age 75, right hemisphere 205.1
1987 Female, age 91, left hemisphere 198.7
2695 Female, age 67, right hemisphere 195.2
2517 Female, age 94, left hemisphere 193.2
Basal amygdala
nTPM: 189.3
2609 Male, age 75, right hemisphere 195.3
1955 Male, age 76, both hemispheres 193.9
2110 Male, age 80, left hemisphere 190.8
2685 Female, age 94, left hemisphere 187.7
2243 Female, age 91, right hemisphere 186.3
2827 Female, age 67, right hemisphere 181.6
Central amygdala
nTPM: 194.7
1905 Male, age 76, both hemispheres 206.3
2826 Female, age 94, left hemisphere 197.3
2515 Male, age 75, right hemisphere 196.3
2239 Male, age 80, left hemisphere 187.9
2701 Female, age 91, right hemisphere 185.8
Corticomedial amygdala
nTPM: 190.7
2428 Male, age 75, right hemisphere 203.1
2829 Male, age 80, left hemisphere 193.2
2429 Female, age 94, left hemisphere 191.9
2242 Female, age 91, right hemisphere 190.3
2240 Male, age 76, both hemispheres 189.5
2535 Female, age 67, right hemisphere 176.5
Lateral amygdala
nTPM: 192.5
1883 Male, age 76, both hemispheres 200.5
2516 Male, age 75, right hemisphere 199.9
2534 Female, age 94, left hemisphere 198.1
2830 Female, age 67, right hemisphere 188.0
2256 Male, age 80, left hemisphere 184.5
2255 Female, age 91, right hemisphere 184.3
Stria terminalis, bed nucleus
nTPM: 195.4
1974 Female, age 91, both hemispheres 207.3
2486 Female, age 94, both hemispheres 190.2
2201 Male, age 74, unknown 188.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 176.6
Samples: 152

Max nTPM: 364.1
Min nTPM: 101.4
Std nTPM: 40.3
Median nTPM: 169.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 364.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 342.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 328.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 269.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 255.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 240.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 234.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 233.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 231.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 225.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 223.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 223.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 217.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 217.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 216.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 215.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 213.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 209.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 206.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 203.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 203.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 201.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 201.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 201.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 199.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 199.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 196.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 195.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 194.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 194.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 192.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 192.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 192.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 191.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 190.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 187.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 186.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 183.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 182.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 181.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 181.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 181.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 180.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 179.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 179.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 178.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 178.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 177.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 177.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 176.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 176.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 173.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 173.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 173.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 173.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 172.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 171.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 171.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 170.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 170.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 169.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 168.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 168.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 168.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 167.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 167.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 166.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 166.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 165.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 165.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 165.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 164.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 162.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 161.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 161.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 161.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 160.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 160.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 159.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 159.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 159.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 158.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 158.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 158.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 157.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 157.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 157.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 156.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 155.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 153.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 153.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 151.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 151.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 151.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 150.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 150.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 149.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 147.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 147.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 146.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 146.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 145.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 144.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 142.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 141.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 141.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 140.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 140.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 138.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 137.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 137.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 136.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 133.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 132.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 130.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 127.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 126.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 124.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 123.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 101.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 66.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 66.4
FF:10151-102I7 76 years, female 66.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.0
Pig sample Sample description nTPM
Amygdala
nTPM: 53.0
Samples: 4

Max nTPM: 76.7
Min nTPM: 40.8
Sample A Female 76.7
Sample B Female 49.1
Sample C Male 40.8
Sample D Male 45.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 142.3
Samples: 4

Max nTPM: 154.8
Min nTPM: 131.7
Sample A Male 144.2
Sample B Male 138.4
Sample C Female 154.8
Sample D Female 131.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.4
68196974 Antisense, RP_040928_01_A04, Mouse strain C57BL/6J (56 days, male) 11.4

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