MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:203.9 nTPM
HPA:203.9 nTPM
GTEx:190.1 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:93.7 nTPM
Mouse:129.1 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 203.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 196.7
2411 Female, age 72, unknown 207.2
2019 Male, age 18, unknown 202.7
1827 Male, age 72, unknown 199.9
1870 Female, age 42, unknown 199.3
1833 Male, age 53, unknown 195.5
2828 Female, age 72, unknown 194.6
2219 Male, age 76, both hemispheres 193.9
1830 Male, age 51, unknown 193.8
2666 Male, age 74, left hemisphere 190.9
2586 Male, age 75, left hemisphere 189.0
Dorsal raphe nucleus
nTPM: 203.9
2298 Female, age 72, unknown 221.8
2047 Male, age 72, unknown 204.5
2750 Male, age 76, both hemispheres 202.5
1828 Male, age 53, unknown 198.1
2016 Female, age 72, unknown 192.9
Inferior colliculus
nTPM: 195.8
2097 Female, age 72, unknown 204.3
1890 Male, age 53, unknown 195.7
1848 Female, age 42, unknown 193.1
2849 Male, age 72, unknown 189.9
Median raphe nucleus
nTPM: 200.2
2220 Male, age 76, midline 200.2
Pedunculopontine tegmental nucleus
nTPM: 202.2
2334 Male, age 80, both hemispheres 205.4
1921 Female, age 85, both hemispheres 201.2
2338 Male, age 61, both hemispheres 200.0
Periaquaductal grey, anterior
nTPM: 201.5
2502 Female, age 75, unknown 202.5
1947 Male, age 18, unknown 202.3
1795 Male, age 51, unknown 199.6
Periaquaductal grey, dorsal
nTPM: 191.5
1840 Male, age 53, unknown 194.6
2464 Female, age 72, unknown 191.8
1831 Male, age 72, unknown 190.6
2850 Male, age 76, both hemispheres 189.0
Periaquaductal grey, lateral
nTPM: 195.0
2272 Male, age 74, both hemispheres 203.4
2053 Male, age 18, unknown 193.2
2140 Male, age 76, both hemispheres 188.3
Pretectal area
nTPM: 202.1
1944 Female, age 72, unknown 210.3
2007 Male, age 72, unknown 209.9
2273 Male, age 74, both hemispheres 209.2
1817 Female, age 42, unknown 208.8
1816 Male, age 51, unknown 207.9
2224 Female, age 72, unknown 204.2
1815 Male, age 53, unknown 200.7
2667 Female, age 75, unknown 200.3
2825 Male, age 18, unknown 191.9
2316 Male, age 76, right hemisphere 189.9
2407 Male, age 75, both hemispheres 189.8
Red nucleus
nTPM: 196.9
1821 Female, age 72, unknown 205.9
2503 Female, age 72, unknown 203.6
2785 Male, age 18, unknown 202.0
1954 Female, age 42, unknown 200.4
2725 Female, age 75, unknown 200.1
1865 Male, age 51, unknown 198.4
1904 Male, age 53, unknown 196.6
2227 Male, age 72, unknown 195.4
2769 Male, age 72, unknown 195.1
2823 Male, age 76, right hemisphere 190.7
2584 Male, age 75, left hemisphere 187.4
2588 Male, age 74, left hemisphere 186.8
Substantia nigra
nTPM: 203.6
1916 Female, age 42, unknown 214.9
1851 Male, age 51, unknown 210.9
1889 Female, age 72, unknown 209.8
1941 Male, age 53, unknown 206.6
2241 Male, age 72, unknown 204.3
2409 Female, age 72, unknown 202.2
2665 Male, age 74, both hemispheres 200.3
2699 Male, age 18, unknown 197.2
2590 Female, age 75, unknown 196.8
2583 Male, age 75, right hemisphere 193.2
Superior colliculus
nTPM: 196.4
2587 Male, age 74, left hemisphere 201.9
2087 Female, age 72, unknown 201.4
1796 Male, age 53, unknown 201.2
2261 Male, age 18, unknown 200.8
2668 Female, age 75, unknown 198.6
1895 Male, age 76, right hemisphere 195.6
1913 Female, age 42, unknown 194.6
1995 Male, age 72, unknown 193.2
1839 Male, age 51, unknown 190.8
2664 Male, age 75, both hemispheres 186.4
Ventral tegmental area
nTPM: 203.1
2410 Female, age 72, unknown 217.6
1915 Female, age 42, unknown 207.3
2218 Male, age 76, both hemispheres 202.9
1942 Male, age 51, unknown 198.8
2021 Male, age 53, unknown 196.6
2223 Female, age 72, unknown 195.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 190.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.1
Samples: 139

Max nTPM: 342.2
Min nTPM: 116.9
Std nTPM: 36.6
Median nTPM: 182.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 342.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 318.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 310.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 277.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 272.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 272.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 260.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 259.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 254.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 253.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 249.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.4
FF:10158-103A5 76 years, female 77.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.7
Pig sample Sample description nTPM
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 114.1
Min nTPM: 68.9
Sample A Female 114.1
Sample B Female 78.7
Sample C Male 80.7
Sample D Male 68.9
Periaqueductal gray
nTPM: 64.1
Samples: 3

Max nTPM: 74.9
Min nTPM: 53.2
Sample B Female 64.2
Sample C Male 74.9
Sample D Male 53.2
Substantia nigra
nTPM: 80.2
Samples: 4

Max nTPM: 117.0
Min nTPM: 63.2
Sample A Female 117.0
Sample B Female 69.1
Sample C Male 71.6
Sample D Male 63.2
Superior colliculi
nTPM: 93.7
Samples: 4

Max nTPM: 115.3
Min nTPM: 78.2
Sample A Female 115.3
Sample B Female 91.3
Sample C Male 89.9
Sample D Male 78.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.2
Samples: 4

Max nTPM: 136.3
Min nTPM: 123.4
Sample A Male 131.5
Sample B Male 125.4
Sample C Female 123.4
Sample D Female 136.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
68196974 Antisense, RP_040928_01_A04, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.