MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.4 nTPM
HPA:107.4 nTPM
GTEx:93.6 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:165.4 nTPM
Mouse:253.5 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.4
1827 Male, age 72, unknown 100.5
2219 Male, age 76, both hemispheres 96.8
2666 Male, age 74, left hemisphere 95.9
2411 Female, age 72, unknown 91.2
2019 Male, age 18, unknown 89.9
2828 Female, age 72, unknown 89.4
2586 Male, age 75, left hemisphere 81.5
1870 Female, age 42, unknown 81.0
1833 Male, age 53, unknown 79.5
1830 Male, age 51, unknown 78.0
Dorsal raphe nucleus
nTPM: 92.0
2298 Female, age 72, unknown 102.0
2750 Male, age 76, both hemispheres 99.6
2047 Male, age 72, unknown 98.6
1828 Male, age 53, unknown 85.7
2016 Female, age 72, unknown 74.4
Inferior colliculus
nTPM: 79.8
2097 Female, age 72, unknown 89.1
1890 Male, age 53, unknown 78.0
1848 Female, age 42, unknown 77.6
2849 Male, age 72, unknown 74.3
Median raphe nucleus
nTPM: 107.4
2220 Male, age 76, midline 107.4
Pedunculopontine tegmental nucleus
nTPM: 90.9
2334 Male, age 80, both hemispheres 104.6
1921 Female, age 85, both hemispheres 85.4
2338 Male, age 61, both hemispheres 82.8
Periaquaductal grey, anterior
nTPM: 87.1
1795 Male, age 51, unknown 93.2
1947 Male, age 18, unknown 91.7
2502 Female, age 75, unknown 76.4
Periaquaductal grey, dorsal
nTPM: 79.4
1831 Male, age 72, unknown 84.0
1840 Male, age 53, unknown 80.5
2464 Female, age 72, unknown 78.7
2850 Male, age 76, both hemispheres 74.5
Periaquaductal grey, lateral
nTPM: 77.9
2272 Male, age 74, both hemispheres 88.1
2053 Male, age 18, unknown 76.6
2140 Male, age 76, both hemispheres 69.0
Pretectal area
nTPM: 93.6
1817 Female, age 42, unknown 110.8
1816 Male, age 51, unknown 109.7
1944 Female, age 72, unknown 106.5
2007 Male, age 72, unknown 104.7
2667 Female, age 75, unknown 100.0
1815 Male, age 53, unknown 98.9
2224 Female, age 72, unknown 86.7
2273 Male, age 74, both hemispheres 86.0
2825 Male, age 18, unknown 78.9
2407 Male, age 75, both hemispheres 77.2
2316 Male, age 76, right hemisphere 70.5
Red nucleus
nTPM: 79.8
1821 Female, age 72, unknown 90.6
2725 Female, age 75, unknown 86.2
2785 Male, age 18, unknown 84.1
1954 Female, age 42, unknown 83.1
1904 Male, age 53, unknown 79.6
2584 Male, age 75, left hemisphere 79.4
2503 Female, age 72, unknown 77.2
2227 Male, age 72, unknown 76.9
2823 Male, age 76, right hemisphere 76.6
1865 Male, age 51, unknown 75.9
2588 Male, age 74, left hemisphere 74.1
2769 Male, age 72, unknown 74.1
Substantia nigra
nTPM: 100.4
1916 Female, age 42, unknown 139.1
1941 Male, age 53, unknown 112.5
1851 Male, age 51, unknown 109.3
1889 Female, age 72, unknown 100.5
2665 Male, age 74, both hemispheres 98.8
2241 Male, age 72, unknown 93.5
2699 Male, age 18, unknown 92.9
2409 Female, age 72, unknown 87.2
2583 Male, age 75, right hemisphere 86.5
2590 Female, age 75, unknown 84.0
Superior colliculus
nTPM: 84.6
2087 Female, age 72, unknown 99.7
2668 Female, age 75, unknown 95.2
1796 Male, age 53, unknown 91.9
2261 Male, age 18, unknown 90.8
1895 Male, age 76, right hemisphere 79.6
1839 Male, age 51, unknown 79.5
1913 Female, age 42, unknown 79.5
2587 Male, age 74, left hemisphere 79.2
2664 Male, age 75, both hemispheres 77.1
1995 Male, age 72, unknown 73.3
Ventral tegmental area
nTPM: 97.4
2410 Female, age 72, unknown 111.1
2218 Male, age 76, both hemispheres 108.9
1915 Female, age 42, unknown 107.3
1942 Male, age 51, unknown 87.3
2021 Male, age 53, unknown 85.8
2223 Female, age 72, unknown 84.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.6
Samples: 139

Max nTPM: 285.0
Min nTPM: 38.0
Std nTPM: 49.1
Median nTPM: 75.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 285.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 275.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 252.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 234.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 214.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 209.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 205.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 189.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 187.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 187.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 181.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.4
Pig sample Sample description nTPM
Midbrain
nTPM: 149.0
Samples: 4

Max nTPM: 178.5
Min nTPM: 121.2
Sample A Female 121.2
Sample B Female 128.8
Sample C Male 178.5
Sample D Male 167.4
Periaqueductal gray
nTPM: 117.3
Samples: 3

Max nTPM: 146.5
Min nTPM: 102.7
Sample B Female 102.7
Sample C Male 146.5
Sample D Male 102.8
Substantia nigra
nTPM: 165.4
Samples: 4

Max nTPM: 224.5
Min nTPM: 91.6
Sample A Female 224.5
Sample B Female 129.2
Sample C Male 216.3
Sample D Male 91.6
Superior colliculi
nTPM: 152.9
Samples: 4

Max nTPM: 179.8
Min nTPM: 117.5
Sample A Female 179.8
Sample B Female 117.5
Sample C Male 166.9
Sample D Male 147.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 253.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 253.5
Samples: 4

Max nTPM: 261.6
Min nTPM: 241.7
Sample A Male 261.6
Sample B Male 250.1
Sample C Female 241.7
Sample D Female 260.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
564647 Antisense, RP_040826_01_B03, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.