BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.3 nTPM
HPA:6.3 nTPM
GTEx:9.3 nTPM
FANTOM5:0.9 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:0.3 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041402
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
2289 Male, age 61, right hemisphere 6.6
1857 Female, age 85, left hemisphere 6.5
1781 Male, age 74, unknown 6.1
2288 Male, age 75, left hemisphere 6.1
2846 Female, age 79, unknown 5.9
1854 Male, age 80, left hemisphere 5.8
2290 Female, age 72, unknown 5.8
2481 Female, age 94, left hemisphere 4.3
Claustrum
nTPM: 5.8
2568 Male, age 61, both hemispheres 7.6
2284 Female, age 91, both hemispheres 7.0
2645 Female, age 72, unknown 6.3
2198 Male, age 80, both hemispheres 5.9
2491 Male, age 75, both hemispheres 5.7
2196 Female, age 79, unknown 5.3
2392 Female, age 94, both hemispheres 5.3
1956 Male, age 74, unknown 5.2
2292 Female, age 85, both hemispheres 4.2
Globus pallidus, externus
nTPM: 3.0
2646 Male, age 61, right hemisphere 3.4
2772 Female, age 79, unknown 3.2
2395 Male, age 75, both hemispheres 3.0
2567 Female, age 72, unknown 2.8
1996 Male, age 80, right hemisphere 2.5
Globus pallidus, internus
nTPM: 2.8
2483 Female, age 94, right hemisphere 3.5
1818 Male, age 74, unknown 3.1
2566 Female, age 72, unknown 2.9
2037 Male, age 80, right hemisphere 2.8
2287 Male, age 75, right hemisphere 2.6
2111 Female, age 85, right hemisphere 2.3
2778 Female, age 91, both hemispheres 2.3
Nucleus accumbens
nTPM: 5.7
1856 Female, age 91, right hemisphere 7.3
2824 Male, age 61, right hemisphere 6.9
1783 Male, age 74, unknown 6.4
1806 Female, age 85, left hemisphere 6.3
2286 Male, age 75, left hemisphere 6.2
2698 Female, age 72, unknown 4.8
2391 Female, age 94, left hemisphere 4.1
2732 Male, age 80, right hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 5.2
2484 Female, age 94, left hemisphere 6.2
2393 Male, age 80, right hemisphere 5.3
2821 Male, age 75, both hemispheres 5.3
2569 Male, age 61, both hemispheres 4.0
Nucleus of the diagonal band
nTPM: 5.7
2195 Female, age 85, both hemispheres 6.4
2775 Male, age 80, right hemisphere 6.0
2029 Male, age 61, right hemisphere 5.9
1812 Female, age 91, both hemispheres 5.6
1979 Male, age 74, unknown 4.8
Olfactory tubercle
nTPM: 6.3
1998 Female, age 91, both hemispheres 7.1
2856 Male, age 75, right hemisphere 6.8
2487 Female, age 94, left hemisphere 6.3
1846 Male, age 80, right hemisphere 4.9
Putamen
nTPM: 5.8
1838 Male, age 80, right hemisphere 6.8
1937 Female, age 91, right hemisphere 6.5
2647 Male, age 75, left hemisphere 6.1
2489 Female, age 72, unknown 5.9
2466 Female, age 79, unknown 5.5
1829 Male, age 74, unknown 5.1
2482 Female, age 94, left hemisphere 4.9
Septal nuclei
nTPM: 5.4
1960 Male, age 74, unknown 6.5
2059 Female, age 85, both hemispheres 6.2
2629 Female, age 94, right hemisphere 6.0
2009 Female, age 91, both hemispheres 5.3
2031 Female, age 72, unknown 5.0
2394 Male, age 61, left hemisphere 4.8
2199 Male, age 80, right hemisphere 4.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.4
Samples: 246

Max nTPM: 17.4
Min nTPM: 1.2
Std nTPM: 3.2
Median nTPM: 8.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 17.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 16.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 14.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 14.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 14.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 14.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 14.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 13.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 13.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 13.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 13.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.3
Samples: 246

Max nTPM: 21.0
Min nTPM: 0.4
Std nTPM: 3.5
Median nTPM: 9.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 21.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 20.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 19.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 17.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 17.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 17.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 16.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 15.8
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 15.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 15.7
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 15.3
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Brain - Putamen (basal ganglia)
Average nTPM: 8.7
Samples: 205

Max nTPM: 17.0
Min nTPM: 0.8
Std nTPM: 3.8
Median nTPM: 8.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 17.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 16.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 16.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 16.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 16.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 15.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 15.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 15.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 15.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 15.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 15.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.9
FF:10164-103B2 76 years, female 0.9
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10161-103A8 76 years, female 0.1
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.4
FF:10037-101F1 23-56 years, mixed 0.4
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Caudate
nTPM: 5.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 6.9
Sample C Male 6.2
Sample D Male 5.7
Putamen
nTPM: 4.5
Samples: 4

Max nTPM: 6.0
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 4.9
Sample C Male 4.3
Sample D Male 6.0
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.4
Sample A Female 5.6
Sample B Female 5.8
Sample C Male 6.2
Sample D Male 5.4
Ventral pallidum
nTPM: 4.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.5
Sample A Female 5.1
Sample B Female 4.5
Sample C Male 5.0
Sample D Male 4.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.3
Sample C Female 0.2
Sample D Female 0.6
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.5
Sample C Female 0.2
Sample D Female 0.1
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
74578182 Antisense, RP_060208_02_G12, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.7
74578182 Antisense, RP_060208_02_G12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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