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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4.5 nTPM
HPA:4.5 nTPM
GTEx:77.8 nTPM
FANTOM5:271.6 Scaled Tags Per Million
Pig:157.5 nTPM
Mouse:215.3 nTPM
Allen mouse:20.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 4.5
Sample id Sample description nTPM
Amygdala
nTPM: 2.0
2514 Male, age 75, right hemisphere 3.7
2695 Female, age 67, right hemisphere 2.8
1987 Female, age 91, left hemisphere 2.5
2517 Female, age 94, left hemisphere 1.2
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 4.5
2685 Female, age 94, left hemisphere 10.5
2827 Female, age 67, right hemisphere 7.5
2609 Male, age 75, right hemisphere 5.7
2243 Female, age 91, right hemisphere 3.2
2110 Male, age 80, left hemisphere 0.3
1955 Male, age 76, both hemispheres 0.0
Central amygdala
nTPM: 2.1
2826 Female, age 94, left hemisphere 6.6
2701 Female, age 91, right hemisphere 2.0
2239 Male, age 80, left hemisphere 1.0
1905 Male, age 76, both hemispheres 0.7
2515 Male, age 75, right hemisphere 0.2
Corticomedial amygdala
nTPM: 4.0
2535 Female, age 67, right hemisphere 13.1
2428 Male, age 75, right hemisphere 5.2
2429 Female, age 94, left hemisphere 4.6
2242 Female, age 91, right hemisphere 1.2
2240 Male, age 76, both hemispheres 0.0
2829 Male, age 80, left hemisphere 0.0
Lateral amygdala
nTPM: 4.2
2256 Male, age 80, left hemisphere 7.8
2255 Female, age 91, right hemisphere 6.0
2534 Female, age 94, left hemisphere 5.5
2516 Male, age 75, right hemisphere 3.1
2830 Female, age 67, right hemisphere 2.7
1883 Male, age 76, both hemispheres 0.0
Stria terminalis, bed nucleus
nTPM: 1.4
2486 Female, age 94, both hemispheres 2.3
2201 Male, age 74, unknown 2.0
1974 Female, age 91, both hemispheres 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 77.8
Samples: 152

Max nTPM: 170.9
Min nTPM: 13.4
Std nTPM: 35.1
Median nTPM: 74.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 166.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 165.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 152.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 139.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 133.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 133.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 131.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 130.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 130.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 129.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 125.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 121.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 118.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 116.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 115.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 114.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 112.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 112.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 111.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 106.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 106.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 104.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 103.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 103.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 102.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 100.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 98.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 97.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 96.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 93.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 91.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 91.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 90.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 86.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 85.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 80.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 79.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 77.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 77.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 76.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 75.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 75.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 74.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 73.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 71.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 70.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 68.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 67.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 67.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 66.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 64.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 63.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 62.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 62.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 60.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 58.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 56.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 55.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 53.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 51.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 51.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 50.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 49.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 48.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 48.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 46.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 46.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 45.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 45.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 44.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 43.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 42.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 42.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 42.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 41.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 40.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 39.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 38.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 38.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 38.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 36.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 36.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 35.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 33.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 32.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 32.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 30.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 29.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 27.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 27.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 27.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 25.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 24.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 23.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 271.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.6
FF:10151-102I7 76 years, female 271.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 157.5
Pig sample Sample description nTPM
Amygdala
nTPM: 157.5
Samples: 4

Max nTPM: 204.0
Min nTPM: 118.9
Sample A Female 204.0
Sample B Female 118.9
Sample C Male 145.8
Sample D Male 161.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.2
Samples: 4

Max nTPM: 224.7
Min nTPM: 203.3
Sample A Male 218.4
Sample B Male 203.3
Sample C Female 214.5
Sample D Female 224.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.3
70305383 Antisense, RP_050609_04_A07, Mouse strain C57BL/6J (56 days, male) 20.3

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