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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Disease related genes Human disease related genes Metabolic proteins RAS pathway related proteins
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
19
Cytoband
q13.32
Chromosome location (bp)
46601074 - 46610782
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
CALM3-201
CALM3-202
CALM3-206
CALM3-208
CALM3-209
CALM3-211
CALM3-212
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Disease related genes Human disease related genes Cardiovascular diseases Cardiac diseases Mapped to neXtProt neXtProt - Evidence at protein level
Show all
GO:0000086 [G2/M transition of mitotic cell cycle] GO:0000226 [microtubule cytoskeleton organization] GO:0000922 [spindle pole] GO:0001975 [response to amphetamine] GO:0002027 [regulation of heart rate] GO:0005509 [calcium ion binding] GO:0005513 [detection of calcium ion] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005737 [cytoplasm] GO:0005813 [centrosome] GO:0005815 [microtubule organizing center] GO:0005819 [spindle] GO:0005856 [cytoskeleton] GO:0005876 [spindle microtubule] GO:0005886 [plasma membrane] GO:0007186 [G protein-coupled receptor signaling pathway] GO:0007190 [activation of adenylate cyclase activity] GO:0008076 [voltage-gated potassium channel complex] GO:0008179 [adenylate cyclase binding] GO:0010800 [positive regulation of peptidyl-threonine phosphorylation] GO:0010801 [negative regulation of peptidyl-threonine phosphorylation] GO:0010856 [adenylate cyclase activator activity] GO:0010880 [regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum] GO:0010881 [regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion] GO:0016301 [kinase activity] GO:0016310 [phosphorylation] GO:0019722 [calcium-mediated signaling] GO:0019901 [protein kinase binding] GO:0019904 [protein domain specific binding] GO:0021762 [substantia nigra development] GO:0030017 [sarcomere] GO:0030234 [enzyme regulator activity] GO:0030235 [nitric-oxide synthase regulator activity] GO:0030426 [growth cone] GO:0030672 [synaptic vesicle membrane] GO:0031432 [titin binding] GO:0031800 [type 3 metabotropic glutamate receptor binding] GO:0031954 [positive regulation of protein autophosphorylation] GO:0031966 [mitochondrial membrane] GO:0031982 [vesicle] GO:0031997 [N-terminal myristoylation domain binding] GO:0032465 [regulation of cytokinesis] GO:0032516 [positive regulation of phosphoprotein phosphatase activity] GO:0032991 [protein-containing complex] GO:0034704 [calcium channel complex] GO:0035307 [positive regulation of protein dephosphorylation] GO:0043005 [neuron projection] GO:0043209 [myelin sheath] GO:0043388 [positive regulation of DNA binding] GO:0043539 [protein serine/threonine kinase activator activity] GO:0043548 [phosphatidylinositol 3-kinase binding] GO:0044325 [ion channel binding] GO:0046872 [metal ion binding] GO:0047485 [protein N-terminus binding] GO:0048306 [calcium-dependent protein binding] GO:0050998 [nitric-oxide synthase binding] GO:0051000 [positive regulation of nitric-oxide synthase activity] GO:0051343 [positive regulation of cyclic-nucleotide phosphodiesterase activity] GO:0051412 [response to corticosterone] GO:0051592 [response to calcium ion] GO:0055117 [regulation of cardiac muscle contraction] GO:0060314 [regulation of ryanodine-sensitive calcium-release channel activity] GO:0060315 [negative regulation of ryanodine-sensitive calcium-release channel activity] GO:0060316 [positive regulation of ryanodine-sensitive calcium-release channel activity] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0072542 [protein phosphatase activator activity] GO:0090150 [establishment of protein localization to membrane] GO:0090151 [establishment of protein localization to mitochondrial membrane] GO:0097718 [disordered domain specific binding] GO:0098901 [regulation of cardiac muscle cell action potential] GO:1900242 [regulation of synaptic vesicle endocytosis] GO:1901841 [regulation of high voltage-gated calcium channel activity] GO:1901842 [negative regulation of high voltage-gated calcium channel activity] GO:1901844 [regulation of cell communication by electrical coupling involved in cardiac conduction] GO:1902494 [catalytic complex] GO:2000300 [regulation of synaptic vesicle exocytosis]
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cardiovascular diseases Cardiac diseases
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cardiovascular diseases Cardiac diseases
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Disease related genes Human disease related genes Cardiovascular diseases Cardiac diseases Mapped to neXtProt neXtProt - Evidence at protein level
Show all
GO:0000226 [microtubule cytoskeleton organization] GO:0000922 [spindle pole] GO:0002027 [regulation of heart rate] GO:0005509 [calcium ion binding] GO:0005513 [detection of calcium ion] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005737 [cytoplasm] GO:0005813 [centrosome] GO:0005815 [microtubule organizing center] GO:0005819 [spindle] GO:0005856 [cytoskeleton] GO:0005876 [spindle microtubule] GO:0005886 [plasma membrane] GO:0007186 [G protein-coupled receptor signaling pathway] GO:0008179 [adenylate cyclase binding] GO:0010800 [positive regulation of peptidyl-threonine phosphorylation] GO:0010801 [negative regulation of peptidyl-threonine phosphorylation] GO:0010856 [adenylate cyclase activator activity] GO:0010880 [regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum] GO:0010881 [regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion] GO:0016301 [kinase activity] GO:0016310 [phosphorylation] GO:0019722 [calcium-mediated signaling] GO:0019901 [protein kinase binding] GO:0019904 [protein domain specific binding] GO:0021762 [substantia nigra development] GO:0030017 [sarcomere] GO:0030234 [enzyme regulator activity] GO:0031432 [titin binding] GO:0031954 [positive regulation of protein autophosphorylation] GO:0031982 [vesicle] GO:0031997 [N-terminal myristoylation domain binding] GO:0032465 [regulation of cytokinesis] GO:0032516 [positive regulation of phosphoprotein phosphatase activity] GO:0032991 [protein-containing complex] GO:0034704 [calcium channel complex] GO:0035307 [positive regulation of protein dephosphorylation] GO:0043539 [protein serine/threonine kinase activator activity] GO:0044325 [ion channel binding] GO:0046872 [metal ion binding] GO:0051343 [positive regulation of cyclic-nucleotide phosphodiesterase activity] GO:0051592 [response to calcium ion] GO:0055117 [regulation of cardiac muscle contraction] GO:0060315 [negative regulation of ryanodine-sensitive calcium-release channel activity] GO:0060316 [positive regulation of ryanodine-sensitive calcium-release channel activity] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0072542 [protein phosphatase activator activity] GO:0097718 [disordered domain specific binding] GO:0098901 [regulation of cardiac muscle cell action potential] GO:1901842 [negative regulation of high voltage-gated calcium channel activity] GO:1901844 [regulation of cell communication by electrical coupling involved in cardiac conduction] GO:1902494 [catalytic complex]
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cardiovascular diseases Cardiac diseases
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cardiovascular diseases Cardiac diseases
Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cardiovascular diseases Cardiac diseases
The Human Protein Atlas project is funded
