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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:290.6 nTPM
HPA:290.6 nTPM
GTEx:235.3 nTPM
FANTOM5:649.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA035464Antibody CAB020681
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells High-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 290.6
overview
Male, age 65
Small intestine sample 232
nTPM: 172.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 382.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 375.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 231.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 235.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 235.3
Samples: 187

Max nTPM: 1179.1
Min nTPM: 3.6
Std nTPM: 236.6
Median nTPM: 152.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1179.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 913.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 843.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 837.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 834.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 776.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 776.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 757.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 731.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 722.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 708.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 675.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 673.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 657.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 639.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 626.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 614.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 603.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 574.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 569.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 559.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 552.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 547.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 520.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 508.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 501.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 496.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 490.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 483.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 481.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 481.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 480.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 477.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 469.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 459.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 458.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 449.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 430.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 428.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 428.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 420.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 410.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 407.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 403.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 389.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 386.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 385.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 385.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 383.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 377.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 374.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 362.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 359.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 356.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 343.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 341.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 327.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 322.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 314.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 313.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 311.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 308.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 299.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 288.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 278.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 277.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 274.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 266.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 258.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 256.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 247.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 246.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 240.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 227.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 223.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 220.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 217.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 205.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 202.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 196.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 193.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 190.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 188.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 188.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 182.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 181.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 176.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 172.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 164.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 162.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 158.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 157.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 155.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 152.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 152.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 150.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 150.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 142.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 140.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 135.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 132.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 130.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 125.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 124.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 124.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 123.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 118.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 117.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 116.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 111.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 102.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 102.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 99.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 96.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 92.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 87.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 83.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 75.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 71.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 70.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 61.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 60.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 60.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 57.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 53.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 51.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 51.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 51.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 51.1
GTEX-1192X-2526-SM-59868 50-59 years, male 50.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 49.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 47.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 47.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 46.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 45.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 40.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 35.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 34.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 34.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 34.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 33.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 29.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 28.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 27.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 27.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 27.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 26.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 26.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 26.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 25.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 23.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 22.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 22.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 21.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 21.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 21.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 20.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 19.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 19.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 19.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 18.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 16.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 16.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 16.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 15.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 15.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 14.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 13.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 12.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 11.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 11.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 11.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 11.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 10.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 9.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 8.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 8.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 7.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 6.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 5.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 649.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 649.3
FF:10024-101D6 15,40,85 years, mixed 649.3

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