MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:46.4 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:104.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
2586 Male, age 75, left hemisphere 68.6
2019 Male, age 18, unknown 55.8
2828 Female, age 72, unknown 50.2
2666 Male, age 74, left hemisphere 41.0
1870 Female, age 42, unknown 36.0
1827 Male, age 72, unknown 35.3
1833 Male, age 53, unknown 35.1
1830 Male, age 51, unknown 34.7
2411 Female, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 28.1
Dorsal raphe nucleus
nTPM: 34.0
2016 Female, age 72, unknown 39.6
1828 Male, age 53, unknown 38.4
2047 Male, age 72, unknown 34.6
2298 Female, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 26.5
Inferior colliculus
nTPM: 36.0
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 38.5
2097 Female, age 72, unknown 33.8
2849 Male, age 72, unknown 32.4
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Pedunculopontine tegmental nucleus
nTPM: 27.1
1921 Female, age 85, both hemispheres 29.4
2334 Male, age 80, both hemispheres 29.2
2338 Male, age 61, both hemispheres 22.6
Periaquaductal grey, anterior
nTPM: 36.7
2502 Female, age 75, unknown 39.1
1795 Male, age 51, unknown 36.1
1947 Male, age 18, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 31.3
1831 Male, age 72, unknown 33.5
1840 Male, age 53, unknown 33.2
2464 Female, age 72, unknown 32.0
2850 Male, age 76, both hemispheres 26.4
Periaquaductal grey, lateral
nTPM: 29.5
2053 Male, age 18, unknown 31.5
2272 Male, age 74, both hemispheres 30.1
2140 Male, age 76, both hemispheres 26.9
Pretectal area
nTPM: 37.4
2407 Male, age 75, both hemispheres 48.0
1817 Female, age 42, unknown 46.4
2007 Male, age 72, unknown 42.1
1815 Male, age 53, unknown 39.7
1816 Male, age 51, unknown 39.7
1944 Female, age 72, unknown 38.1
2273 Male, age 74, both hemispheres 37.0
2667 Female, age 75, unknown 34.9
2316 Male, age 76, right hemisphere 28.8
2825 Male, age 18, unknown 28.4
2224 Female, age 72, unknown 28.0
Red nucleus
nTPM: 37.9
2785 Male, age 18, unknown 45.9
2584 Male, age 75, left hemisphere 42.7
2588 Male, age 74, left hemisphere 42.6
2769 Male, age 72, unknown 38.5
1954 Female, age 42, unknown 37.7
2227 Male, age 72, unknown 37.7
2503 Female, age 72, unknown 36.8
1865 Male, age 51, unknown 36.7
1821 Female, age 72, unknown 35.4
1904 Male, age 53, unknown 34.7
2823 Male, age 76, right hemisphere 33.8
2725 Female, age 75, unknown 32.7
Substantia nigra
nTPM: 36.9
2583 Male, age 75, right hemisphere 48.8
2590 Female, age 75, unknown 42.1
2665 Male, age 74, both hemispheres 40.4
1851 Male, age 51, unknown 37.8
1916 Female, age 42, unknown 36.7
1889 Female, age 72, unknown 35.3
1941 Male, age 53, unknown 35.3
2699 Male, age 18, unknown 31.3
2409 Female, age 72, unknown 30.9
2241 Male, age 72, unknown 30.4
Superior colliculus
nTPM: 39.7
2664 Male, age 75, both hemispheres 64.4
1995 Male, age 72, unknown 46.4
1913 Female, age 42, unknown 39.0
2668 Female, age 75, unknown 38.8
2087 Female, age 72, unknown 38.2
1839 Male, age 51, unknown 36.7
1796 Male, age 53, unknown 34.2
2587 Male, age 74, left hemisphere 33.9
2261 Male, age 18, unknown 33.8
1895 Male, age 76, right hemisphere 31.9
Ventral tegmental area
nTPM: 34.2
1942 Male, age 51, unknown 39.9
2410 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 35.6
1915 Female, age 42, unknown 33.6
2223 Female, age 72, unknown 32.8
2218 Male, age 76, both hemispheres 27.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.4
Samples: 139

Max nTPM: 96.1
Min nTPM: 22.9
Std nTPM: 12.7
Median nTPM: 43.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 82.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 79.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 73.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 72.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 69.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 68.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 68.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.0
Pig sample Sample description nTPM
Midbrain
nTPM: 75.0
Samples: 4

Max nTPM: 88.4
Min nTPM: 58.9
Sample A Female 79.0
Sample B Female 58.9
Sample C Male 88.4
Sample D Male 73.5
Periaqueductal gray
nTPM: 60.7
Samples: 3

Max nTPM: 63.5
Min nTPM: 56.4
Sample B Female 62.2
Sample C Male 63.5
Sample D Male 56.4
Substantia nigra
nTPM: 62.9
Samples: 4

Max nTPM: 74.2
Min nTPM: 51.2
Sample A Female 74.2
Sample B Female 51.2
Sample C Male 61.1
Sample D Male 65.1
Superior colliculi
nTPM: 71.6
Samples: 4

Max nTPM: 83.3
Min nTPM: 47.1
Sample A Female 83.3
Sample B Female 47.1
Sample C Male 76.5
Sample D Male 79.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 108.0
Min nTPM: 97.8
Sample A Male 108.0
Sample B Male 97.8
Sample C Female 107.5
Sample D Female 106.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
85 Antisense, RP_Baylor_103163, Mouse strain C57BL/6J (56 days, male) 3.2
86 Antisense, RP_Baylor_103163, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.