BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:30.8 nTPM
FANTOM5:3.6 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA018517
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.9
2481 Female, age 94, left hemisphere 12.5
2289 Male, age 61, right hemisphere 11.7
2290 Female, age 72, unknown 10.5
1854 Male, age 80, left hemisphere 10.3
1857 Female, age 85, left hemisphere 10.3
2288 Male, age 75, left hemisphere 8.2
1781 Male, age 74, unknown 7.9
2846 Female, age 79, unknown 7.6
Claustrum
nTPM: 10.4
2196 Female, age 79, unknown 23.7
2568 Male, age 61, both hemispheres 10.0
2284 Female, age 91, both hemispheres 9.2
1956 Male, age 74, unknown 9.1
2292 Female, age 85, both hemispheres 8.8
2198 Male, age 80, both hemispheres 8.3
2392 Female, age 94, both hemispheres 8.3
2491 Male, age 75, both hemispheres 8.2
2645 Female, age 72, unknown 7.7
Globus pallidus, externus
nTPM: 10.9
1996 Male, age 80, right hemisphere 13.7
2567 Female, age 72, unknown 11.3
2646 Male, age 61, right hemisphere 11.1
2395 Male, age 75, both hemispheres 10.1
2772 Female, age 79, unknown 8.2
Globus pallidus, internus
nTPM: 11.8
2483 Female, age 94, right hemisphere 14.1
2778 Female, age 91, both hemispheres 12.1
2111 Female, age 85, right hemisphere 11.8
1818 Male, age 74, unknown 11.7
2037 Male, age 80, right hemisphere 11.5
2287 Male, age 75, right hemisphere 10.9
2566 Female, age 72, unknown 10.6
Nucleus accumbens
nTPM: 10.0
1783 Male, age 74, unknown 10.4
2824 Male, age 61, right hemisphere 10.4
2732 Male, age 80, right hemisphere 10.1
1806 Female, age 85, left hemisphere 10.0
2391 Female, age 94, left hemisphere 10.0
1856 Female, age 91, right hemisphere 9.9
2698 Female, age 72, unknown 9.5
2286 Male, age 75, left hemisphere 9.4
Nucleus basalis of Meynert
nTPM: 10.7
2569 Male, age 61, both hemispheres 12.6
2484 Female, age 94, left hemisphere 10.4
2393 Male, age 80, right hemisphere 10.2
2821 Male, age 75, both hemispheres 9.5
Nucleus of the diagonal band
nTPM: 9.5
2775 Male, age 80, right hemisphere 10.4
1979 Male, age 74, unknown 9.8
2195 Female, age 85, both hemispheres 9.2
2029 Male, age 61, right hemisphere 9.1
1812 Female, age 91, both hemispheres 8.9
Olfactory tubercle
nTPM: 9.2
2856 Male, age 75, right hemisphere 9.9
1998 Female, age 91, both hemispheres 9.4
1846 Male, age 80, right hemisphere 8.9
2487 Female, age 94, left hemisphere 8.7
Putamen
nTPM: 10.3
1829 Male, age 74, unknown 11.2
2482 Female, age 94, left hemisphere 11.1
2489 Female, age 72, unknown 10.6
1838 Male, age 80, right hemisphere 10.2
2466 Female, age 79, unknown 10.2
2647 Male, age 75, left hemisphere 9.6
1937 Female, age 91, right hemisphere 8.8
Septal nuclei
nTPM: 10.1
1960 Male, age 74, unknown 11.3
2059 Female, age 85, both hemispheres 11.2
2009 Female, age 91, both hemispheres 10.8
2394 Male, age 61, left hemisphere 10.4
2031 Female, age 72, unknown 9.5
2199 Male, age 80, right hemisphere 9.4
2629 Female, age 94, right hemisphere 8.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 141.7
Min nTPM: 2.8
Std nTPM: 27.1
Median nTPM: 10.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 124.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 111.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 104.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 96.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 90.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 81.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 78.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 78.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 77.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.2
Samples: 246

Max nTPM: 131.4
Min nTPM: 2.3
Std nTPM: 25.4
Median nTPM: 10.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 131.4
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 109.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 98.4
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 96.5
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 90.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 86.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 84.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 84.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 79.0
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 72.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 72.0
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Brain - Putamen (basal ganglia)
Average nTPM: 30.8
Samples: 205

Max nTPM: 125.1
Min nTPM: 3.3
Std nTPM: 29.9
Median nTPM: 11.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 125.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 118.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 116.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 108.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 96.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 96.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 96.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 94.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 94.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 88.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 87.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.0
FF:10164-103B2 76 years, female 2.0
Globus pallidus
Scaled Tags Per Million: 2.8
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 0.9
Nucleus accumbens
Scaled Tags Per Million: 3.6
FF:10037-101F1 23-56 years, mixed 3.6
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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